UFO01163.5prime Sequence
1212 bp (49 high quality bases) assembled on 2008-07-09
> UFO01163.5prime
GCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAATCCAC
ATGTCTGGAAATCCTTTCGACGGCGACGAACATCAGAGCTCGGCCAGTGG
AGAGAGACTATAGGGCTTCCTATGTCCCATTTGCCGTGCGGATCTCCCGT
CCATCGATGTGCTCGCGGATCATTTTGCCCGCCAGCTTGCGGAAGAGGAG
GATGCCCTAAAATCCTTTAAAGATATCTTTACCAAGGCTAAAAAGAAAAT
CCTAAACCCCTTTGAGGATGAAAAAGGTGCATCTGTATCGTCGCCCGCAG
GTTCCTCCTCTTCAGCGGCTGGCAAGAATCCCAATGGCAACAGAGATCGC
AATGGACCTTATAATGCCCGCTCCCGTCTAATTGTATTTAACTATATGGA
CAGTCAGCACCCTGGTGCTGAGTGCTCCCACTTCGAGTACTTTCGTGCCA
TTCTCAATCCTCGCCTGGAGCGATATGCCAACAAAACAAACAAACTAATC
ATTCGTTTGCACCGCCTGCTTAAGGATCTGCCATGAGGATTCAGTGCATC
GGCGTCAACATGAACAGCAAACAGTTGGCTGACTGGATGGTAGATCCGTC
AAGTTGTGTCCCACTTGTGCCAAGAGTTTCCGCATCGCACGAAGACGACT
CCACTGCCGATTGTGCGGAGGCATAGTGTGCAGTGATTGCTCCAAGTTCC
TGCCTCTGGAGGATGCCATGCAACTACCCAGTCTTTCCACCACAAGAAGC
GAGCCCCTTCATCATCTGCATCTATATGATAACGCCATCCGGGTGTGCGA
ATCTGCCTTTGGCTGCTGGACACCCAAAGGATATGCACGATAGTCGCACT
TGTCACCCACTCCTCGGCACGTCTACGAACAATTCGGCAACTACAAAAGA
AATTCCCCTGGATGCGGACTTGTATGTAAAAACATCAGTAGCTTGGACGA
AGGTGACACATCTTCACGTTGGCTGATGGCGGGTGCTTTGCGCGGCTAGA
TTGGACTAGTGGACGGAGGCTATGGACATGAGGATCCACGCCGCGGTCTA
CCGATATTTGGTGACCAGGACGCTCGTCGGAGGCATAAGACGGCATGCGG
GTGGGGGCTGCTCCTAGCGTCAGGACGAGGTCATCCATGCCCCACGACTA
GATCGGCATCGCAGAGGCGGACGCTAGCCAGTGAAACGGGGATGAGCTGT
ATGCCTCTCACG
UFO01163.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbsn-5-RA | 1846 | CG8506-RA | 261..1248 | 51..1034 | 3625 | 91.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8160092..8160758 | 51..718 | 2675 | 93.7 | Plus |
| 2L | 23513712 | 2L | 8160817..8161137 | 719..1034 | 700 | 87.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:11:02 has no hits.
UFO01163.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:01:40 Download gff for
UFO01163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbsn-RA | 254..1247 | 51..1041 | 91 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:05:35 Download gff for
UFO01163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbsn-5-RA | 261..1254 | 51..1041 | 91 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:43 Download gff for
UFO01163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbsn-5-RA | 261..1254 | 51..1041 | 91 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:43 Download gff for
UFO01163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8160094..8160758 | 53..718 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:05:35 Download gff for
UFO01163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8160094..8160758 | 53..718 | 93 | -> | Plus |
