UFO01165.5prime Sequence
1217 bp (1040 high quality bases) assembled on 2008-07-09
> UFO01165.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGGCCACAAAACCGGGAAAAGGTGACGGCAAGCAGGTGAAGGGAAAAA
GGACCTCCAAGAACAAGACAGATGGCCCCGGCGGTGGTGGCGGCGATGCC
GATGACTTCGATGCCTGGATGAAGTCGCGCCAGCTGCTCAAGCCCGATGA
CCAGCTCGATCTCACCGAGGCGGAACTGGGCGAGGAGATCACCAAGGTGC
TGACTCCCACCAACACGAACATCGTTCGCAATCTCGTGGTCTATAGCTTC
AAGGAAGGCGAGTTTGTTCCGGCTCCGTTGCCCGGCAATACGGTCACCCT
AATCGCCTTTGCCGGCAACTCACTTCACGTGGACTCCGATGAGGGTCGCC
GTCAGATCGAGGAGTCCGACGAGATTGGCTACCCACTGCCCATGCCCAAC
TACACTGTGGTGGAGCAGCGCGAGACGGATAACGTCGACGGTGAGGAGGG
AGAGGGCGAGGAGGATGATGATGGGGCCACCGCAAAGGACGCCGCCGTAG
AAGACGAGGATGTCGAGGAGGAGGACGACGAGGAGGCCAAGGGCACCGAA
GGCGATGAGGGCGAGGGCGAAGGCGAGGGAGAGGGTGCTGCTGCCCGCCA
GGAGGACGATGAGCCCGCCCACCAAGCGGCGGCCGTTTCATCCAAGAAAC
GCAAGCTAATCAACCAGTTCAACTACTGCGAACGTGGTGCCCTCACCTAC
ACAAATCCCAAAAGGAATGTAGACACCCAGACCATACCCCCACCCCGTTC
CCAGTTTGGAGCCAATGTGCTGCAGTGGGTCATCTATGATTCCTATATGG
AGAACTTTGCGGAGTCCCAGAAGACGGCACCAAGAATGAGGAGCGCAAGC
GCGGCAAGAGGAGAAGAAGTTCCGGGATAAGTCGGCCATTGCCGAGCAGC
TCACAAGAAGTATCTCAAATGCTGGCAGATACTCGAGCGCATGATCAATC
AGATATCTACGATGACATCGCCCACGACTTTCGCTACTGGGAGATCGCTG
ATGAGTTTCGTGGAGGTGAGGCAACTGCTGCACTCTTGAAGTTCAGTACG
ACAGACAGAGATGACGTCACGAACTCTGTCATCCGACTACTATGATCTCT
TCGCGCTTGTTTCGAATGATGAACTTCTGACCGAAAATGAGGGAACTTGG
GGCCGTGTCCGCGGTTT
UFO01165.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9313-RC | 3069 | CG9313-RC | 606..1729 | 52..1154 | 5010 | 97.5 | Plus |
| CG9313-RA | 2649 | CG9313-RA | 186..1309 | 52..1154 | 5010 | 97.5 | Plus |
| CG9313-RB | 2652 | CG9313-RB | 186..1312 | 52..1154 | 4970 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20981311..20981741 | 100..530 | 2155 | 100 | Plus |
| 2R | 25286936 | 2R | 20982096..20982409 | 765..1071 | 1195 | 96.5 | Plus |
| 2R | 25286936 | 2R | 20981801..20982035 | 531..765 | 1175 | 100 | Plus |
| 2R | 25286936 | 2R | 20979506..20979553 | 52..99 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:13:37 has no hits.
UFO01165.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:01:42 Download gff for
UFO01165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9313-RA | 156..1300 | 44..1167 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:53 Download gff for
UFO01165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9313-RA | 179..1323 | 44..1167 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:30 Download gff for
UFO01165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9313-RA | 179..1323 | 44..1167 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:30 Download gff for
UFO01165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20981801..20982035 | 531..765 | 100 | -> | Plus |
| 2R | 20979506..20979557 | 52..101 | 94 | -> | Plus |
| 2R | 20981313..20981741 | 102..530 | 100 | -> | Plus |
| 2R | 20982097..20982520 | 766..1167 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:53 Download gff for
UFO01165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16867011..16867062 | 52..101 | 94 | -> | Plus |
| arm_2R | 16868818..16869246 | 102..530 | 100 | -> | Plus |
| arm_2R | 16869306..16869540 | 531..765 | 100 | -> | Plus |
| arm_2R | 16869602..16870025 | 766..1167 | 92 | | Plus |
