UFO01167.5prime Sequence
1196 bp (1013 high quality bases) assembled on 2008-07-09
> UFO01167.5prime
TGCGGCCGCCTAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGACACAGCGTTTCGATGACTGCGAACAAGTGATCACCGATGGCAGGC
GAAACTTCGACAGCGAAATCCTTTCACCGCCCGGCAATGACGAAATCAAG
GAGGATCAATGGATGGGCGTTACGGTGCGTTCGAATCCCCTACAGGCCAA
CGGATCCGGCGGAAAGGTAATCGTCTGCGCCCATCGCTATATGTACATCG
TCCGAGAGAATCGTTATGGACAGGGTCTCTGCTATCTCCTAACGAACGAT
CTGCAATTCGAAGAGGTCCACGAGCCCTGCAAAGGACGACCTGTGCAAAG
GCAACACGAAGATTATGGACTGTGCCAGGCGGGCACATCGGCTGCCCTAC
TGGACGATGACACCATGGTGTTGGGTTCCCCTGGACCGTACACATGGCGC
GGATCCATTTGGGTGACTCAGGTGGGCGGGGAGTACCTGCAGCGCGACAA
GACGACCTACTACAGTGATCATTCGGACTTGAATTCGCCGGTGGACAAGT
ACAGCTATCTTGGTATGTCGGTGACCGGTGGCAGATTCTTTGGTCACATG
TCATATGCGGCTGGAGCTCCACGATCCGAGGGTCATGGACAGGTGGTGAT
TTTCGACAAGTCCACCGATAATCCAATACCGGTGCACTCGATCCTGGATG
GTGAGCAATTCGGTTCGAGTTTTGGCTATGAACTGGCAACCGCCGATATA
AACGGAGATCACAGGCCGGATTTAATAGTGGCAGCTCCTTTGTACTTCAC
AAAAACGGAAGGTGGAGCTGTGTATGTGTACCAGAATATCCAGGATACGT
TGCCCATGAAGTACACACTCAAGTTGACGGGACCTCTGGAGAGTCGTTTC
GGTCTGGCGTTGGCCAATATCGGAGATCTGAACAAGGATAACTGCGAGGA
TCTGGCCGTGGGAGCACCATACGAGGGCAACGGCGTAGTCTAATCTACTT
GGGCTCGAGTCAGGGCTGATTCAGCCCGCCAAAGATCAGGCCTCGGACCT
GGGTGAACATACCATGTCACGATTCGTACTTTGCATTCTATATCCGCACA
CGGACTTGATGATACTCTATCCGGATGGGTATCGACTCAGTCCTGGAAGG
TCAGTAATCTGCTGCCAACCTATCTATCGCATTCGAACGAGAGGTG
UFO01167.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mew-RE | 3863 | CG1771-RE | 253..1351 | 52..1127 | 4935 | 97.8 | Plus |
| mew-RF | 4254 | CG1771-RF | 644..1742 | 52..1127 | 4935 | 97.8 | Plus |
| mew-RB | 5001 | CG1771-RB | 644..1742 | 52..1127 | 4935 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13217998..13218666 | 1016..349 | 3295 | 99.9 | Minus |
| X | 23542271 | X | 13219747..13219883 | 351..215 | 685 | 100 | Minus |
| X | 23542271 | X | 13220030..13220146 | 220..104 | 585 | 100 | Minus |
| X | 23542271 | X | 13224984..13225035 | 103..52 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:33:58 has no hits.
UFO01167.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:01:44 Download gff for
UFO01167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mew-RB | 627..1662 | 46..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:20 Download gff for
UFO01167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mew-RB | 639..1674 | 46..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:31 Download gff for
UFO01167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mew-RB | 639..1674 | 46..1069 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:31 Download gff for
UFO01167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13217933..13218664 | 351..1069 | 98 | <- | Minus |
| X | 13219748..13219881 | 217..350 | 100 | <- | Minus |
| X | 13220034..13220146 | 104..216 | 100 | <- | Minus |
| X | 13224984..13225042 | 45..103 | 93 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:20 Download gff for
UFO01167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13111966..13112697 | 351..1069 | 98 | <- | Minus |
| arm_X | 13113781..13113914 | 217..350 | 100 | <- | Minus |
| arm_X | 13114067..13114179 | 104..216 | 100 | <- | Minus |
| arm_X | 13119017..13119075 | 45..103 | 93 | <- | Minus |
