UFO01168.5prime Sequence
1204 bp (1053 high quality bases) assembled on 2008-07-09
> UFO01168.5prime
TCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTC
GACATGGCCCAGACGGCATACTTGAAGGTGACACGCATCGCGATGCGCTC
CGCTTCGAATCTTTCCAAACGGCGGGTGGAGGAGCTGAACTCCGGGCTCG
GCGAGCTACGGCAGCTGCTGTCTTGCGTGGTCTGCTGCCAGCTGCTGGTG
GATCCCTACTCGCCCAAGGGCAAGCGGTGCCAGCACAACGTGTGCCGGCT
GTGTCTGCGCGGTAAGAAGCATCTGTTTCCCAGCTGCACCCAGTGCGAGG
GTTGCTCCGACTTCAAGACCTACGAGGAGAACCGTATGATGGCCGCCCAG
CTACTGTGCTACAAGACGCTGTGCGTCCACCTGCTCCACTCGGCATTATT
TGGTGAGCTGGCCGGGATGCGGCCCCAGGTGGCCAGGGAGCTGGTGCCTC
GCATCAAGCTGCCTCCCAAAACCACACAGGAGTTCATTCGCGAGGGCTCA
AACATCTCCGACACTTTTGACATCTTTCTGCCCCAGCCGGATTTGCCGTT
CCTCAAGGACATGCCCACATCGCTGCCCGCAGAGACGCCGCCTACGTCGG
CGGTCACGACTCCGGAACTGCCCTATGATCACCACCTCAACATCAGCGAC
ATTGAGGCGGAGGCGGCGGCCACAGCGGAGCAGGGTCACTTCTCGCCGCT
TCCCCTGCTGCCCACAGGATCTCGCATGGGCATGCTCTCTCACGCCGGGC
AAATAGTCATTGCCACCGAGAGCTCGGAGTCGGGCTTCATGGACCAAGCG
TGGACGGATCAGGTAGACCTGTCTGGCACGGTTTCGGTGTCCAAATACAC
AAATAGCGGCAACAACTTTGCTGTCTCCTACGTGATGCCCACTTCTGCGA
CCACGAAGTTCGATCCACAGGAACTGCAAATCGGCCAGGTGGTGCAATGG
CGACTCCACTCAGTTGGCTGTGCTGGCTGCCGTTGAGAGACCGTCGAGAC
GTCCACACAGTTGACTGTGCTCTCCACCACCGTGAAGAGACCGTTGAAAC
ATCCACCGCAGCTAGATGCTACCTCCGCTGAGACCCACGATCTCTGATCA
TGCTATCTGCAGTGAGATCTGATGAGGTCTGTTGAAGACCGTTGCAGCTA
GGACTTAATCGTCAAGGTTTACTGGACACCCATTGGAGGAGGATCCTCAC
CCCT
UFO01168.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:14:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msl-2-RA | 3843 | CG3241-RA | 473..1579 | 53..1138 | 5015 | 97.9 | Plus |
| msl-2-RB | 3710 | CG3241-RB | 340..1446 | 53..1138 | 5015 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:14:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3464633..3465640 | 1056..53 | 4840 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:14:33 has no hits.
UFO01168.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:03:27 Download gff for
UFO01168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-2-RA | 463..1530 | 43..1100 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:29 Download gff for
UFO01168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-2-RB | 331..1398 | 43..1100 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:55 Download gff for
UFO01168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-2-RB | 331..1398 | 43..1100 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:55 Download gff for
UFO01168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3464582..3465644 | 50..1100 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:29 Download gff for
UFO01168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3464582..3465644 | 50..1100 | 98 | <- | Minus |
