UFO01169.5prime Sequence
1229 bp (1054 high quality bases) assembled on 2008-07-09
> UFO01169.5prime
GATCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAG
TCGACATGGGTTTAAATGCCAAGAGTGTTTGTTCTACCAGCAGCACTGAG
CCAAATGGCAGCATAGTCACAACCGCCCCCAGCAACGGAGAAGTGAGCAG
CAGCATAGTCGTCGTCGTCAGCAGCAGTAGTATCAGTAGCAGCAGCGATA
GCCCAATCGCTATCCTTCCACATCCAGATCCAATCCCATCAACATCGTTC
TCTTCAGCGTCGCAACGAAGTGAAGAGGAGCTACCAGGAACCTCAGCAGC
CTCCAGAACCGACGAGATGTGCTCTTGTGATAGCCAGAATCTTGCAGCAT
CCACAGCCGCGACTTCCAATGGCAATAAACGTAAACGGCGTTTAAGCAGC
GATTCAAACGAGGACCCTGAACTCGGTTTTGAGCCTCCATCAGCTAAGCG
CCAGCAGCGACTGCCCGCTTTGTACGGCAGCGAGCAGGGCAATCTGTCAT
CGGTTGCCTCCTCGGTCTACACCTCGCCCGTTGTCTCGGTTGATGGCCAG
AGTACCCAGGAGCTGCTCAGCATACGTAGCTCACCGGCCGAGGATCTGTC
GGAGGCGCCACACAGTCCGCTGCCGGACAGCCCGGACAGTCCGCCGAGTC
CGGATCGTGGAAGCAAGCAGACGCCAGTGGTGGTGCGCTACGCTGCGGAG
CAGGTGGTGACCAGTACGGTGGTCACGCAGAAGACGGAGGATGATGACCT
TTTGGACGACAGCTGCGAGGACTACTCGTACGACGAGGATGATGAGGATG
ACGTTGAGGAGGAGGACGACGACGTGGAGATCTACTCCTCCACAATTTCT
CCAGCCTCCTCCGGCTGCAGCCAGCAGCAGGCGGTGAATGGAGAGCGTAC
TCCCGGCCTGCCAAAACATCAGGAGCAGATCCATCATCCGGTCAGTGACC
TGATGATTAACATGCGGACGCCCATGTCGCCGGCTGTGAGACGGTCTGCG
CCAGTGCCCACTTCCTGCGCTCGCTGGCTACGCCGCCGATGTTGCGCCTG
ATGTGTCACGGGATGAGCAGACTCGCGTCTGCCAGCATTTCGATGCTGAA
CAGCATCCGACTGCACCCACGTATGCCTGCCATTCTCTTGACTGTGATCC
AGGTGGAAGTTACACAGCCTGCAGCTTCGGAACCTTCTACTTGGGCCGCG
TCACATACCTGAATTGCCATTTGTGCCCA
UFO01169.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CycE-RD | 3946 | CG3938-RD | 517..1631 | 56..1154 | 5160 | 98.3 | Plus |
| CycE-RE | 3703 | CG3938-RE | 274..1388 | 56..1154 | 5160 | 98.3 | Plus |
| CycE-RA | 3653 | CG3938-RA | 427..1541 | 56..1154 | 5160 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15730096..15730838 | 1140..411 | 3130 | 97.6 | Minus |
| 2L | 23513712 | 2L | 15737627..15737966 | 413..74 | 1700 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:43:29 has no hits.
UFO01169.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:06:15 Download gff for
UFO01169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycE-RE | 279..1448 | 56..1211 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:50 Download gff for
UFO01169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycE-RA | 427..1596 | 56..1211 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:16:10 Download gff for
UFO01169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycE-RA | 427..1596 | 56..1211 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:16:10 Download gff for
UFO01169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15730024..15730836 | 413..1211 | 95 | <- | Minus |
| 2L | 15737628..15737964 | 76..412 | 100 | <- | Minus |
| 2L | 15740772..15740791 | 56..75 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:50 Download gff for
UFO01169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15730024..15730836 | 413..1211 | 95 | <- | Minus |
| arm_2L | 15737628..15737964 | 76..412 | 100 | <- | Minus |
| arm_2L | 15740772..15740791 | 56..75 | 100 | | Minus |
