UFO01171.5prime Sequence
1181 bp (1031 high quality bases) assembled on 2008-07-09
> UFO01171.5prime
TCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTC
GACATGTCGAAGTTTCTGGGCGTGCCGCTGAAGAAGCCGTCGGAGGTGGA
TGTGATCAAGCCGCTGAACAATCTCATCCAGAGCACCTACAACGGTGCGT
CGGAGGAGGAGAAGGGCAAGTACGGAGAGGCCGTCAACGAATTTTCGAAA
CAACGCAATACGGCAATTTGGAAATTCTTTGAAAAGTACGAGGCTTCGCT
GGAGATTGTGTACGCCTATTATGACCAGATTTGTGCGCTGGAGACCAAGA
TATCGGTTAGCGAACTTCAGATACCCTTTAAGTGGAAGGATGCCTTCGAC
AAGGGCTCCATTTTCGGCGGCAAGATCAGCCTGACTCACACCTCCTTGCT
TTACGAGAAGGTCTGTGTGCTCTTCAACATTGCCGCCCTGCAGAGCAACA
TCGCTGCCAACCAGTCCCTGGATTCGGATGACGGCCTTAAGCTGACCATC
AAACTGCTCCAGCAGAGCGCCGGCATCTTTCAGTATTTGAAGGGAGCGAC
GCCAGCGGCAGTGCCCTCGGAACCCACGCCCGATCTCAGCCAGGATACGC
TAACCGTGCTGCAGGCTCTGATGGTCGCCCAAGCGCAGGAGGTTTTCATT
CTGAAGGCAATTAAGGATAACTTGAAGGACCAGATCATCGCCAAGCTTTG
CTGCCAGGCGGAGGAGTCTTACGCCGATGTGCTGCGCGCTATGCAAAAGG
AGTCTGTGCGCAGCCTGTGGGAGAAGGAGTGGATACCTACTATTGCTGGA
AAGCAGGCCGGCTTCCATGCCCTCACCCAGTTGTACCAGAGTCTGGTGTG
CCGTGCCGCCAAGAAGATTGGCGAGGAGATTGCTCGCTTGCGCAACGCCA
TTGATCTTTTCAAGGCGGCTCAGACGCGTAGCGGAATGAGACCTACTTGG
ATGATACTTCAGCGCGCAGCGCAACTTGACCGAGTCACAGACACGAGTCA
TCTACACGAGATCATACAGAGCTGACACTGACTCTCTGAAAAGCCAGTGC
AGCCCTGCATGCTGTCCTGCTGAAATTAAGATATCACAGCTATGCGTGGA
CTTCATCTGGTCTGACGCCTCGAATTGGCGATGAATCGACTGAATTGTGG
ATGCGTACACCGACCTGAGTCGTTTTGGCCA
UFO01171.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ALiX-RA | 2892 | CG12876-RA | 132..1116 | 54..1025 | 4620 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27698406..27698731 | 986..666 | 1420 | 97.9 | Minus |
| 3R | 32079331 | 3R | 27699086..27699367 | 666..385 | 1410 | 100 | Minus |
| 3R | 32079331 | 3R | 27699768..27699979 | 265..54 | 1060 | 100 | Minus |
| 3R | 32079331 | 3R | 27699435..27699553 | 384..266 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:42:39 has no hits.
UFO01171.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:06:14 Download gff for
UFO01171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ALiX-RA | 267..1265 | 54..1037 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:53 Download gff for
UFO01171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ALiX-RA | 132..1130 | 54..1037 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:18 Download gff for
UFO01171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ALiX-RA | 132..1130 | 54..1037 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:18 Download gff for
UFO01171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27698345..27698730 | 667..1037 | 95 | <- | Minus |
| 3R | 27699086..27699367 | 385..666 | 100 | <- | Minus |
| 3R | 27699435..27699553 | 266..384 | 100 | <- | Minus |
| 3R | 27699768..27699979 | 54..265 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:53 Download gff for
UFO01171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23524067..23524452 | 667..1037 | 95 | <- | Minus |
| arm_3R | 23524808..23525089 | 385..666 | 100 | <- | Minus |
| arm_3R | 23525157..23525275 | 266..384 | 100 | <- | Minus |
| arm_3R | 23525490..23525701 | 54..265 | 100 | | Minus |
