UFO01172.5prime Sequence
1183 bp (1054 high quality bases) assembled on 2008-07-09
> UFO01172.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGGTAAAGAAGCGTCAGGCGGACAGTCGCGACCACGATTGCTCAACGG
ATTCCGGCAATGAGGATCTGCATCATCGAAAAGGACTCGGCTCGCCCGGT
CAGTCGGATGGCGCCACCCCCACCACCGCCAGCTGCCAGCACATCAAGAA
GGCGGTGGACGCGGCCCGACTAAGGCGTCTACTGAAGTCCACGGGTCTAC
TCTACGAGTGCAGCCAATGTCAGAAGCTGGGCAAGACAGCGGGCAGCGCT
GCGGGAGCGGGAGCGAGTGAAGGAGCTGTCGGTCCTGGCGGAAATCCGGT
CACCTTCGAATTTGACAACACCCTGTGGCTGTGCCTCAAGTGCGGCAGCC
AGCTGTGCGGGAGGGCACGCCACAAGCACGCCTTAGAACACTACCAGACA
CCTCATTCGGACTCACATGCCCTGGCCATGAATACGCGCTCCTTCGACAT
CTGGTGCTATGAGTGCGACATGAAGATCTGCTCCAATCTGCGCAAAAACC
TGCTTGAGTGCGTGGAGCTGGTCAAGAAATTGGCCCAGAAGCCGCCCACT
AGCACGGTTACGCCCAGTACGCCAACGATTAGCTACATCGAGGAGAAGCT
TAAAGCCGCGCTGGAGCATCTCACACCAATAGTGCCAATGACTGGCGGAT
CATTTGACGACTCCAGCAGTAGAGGGTCTCTGGCGGCGGCCGGTGGCGGG
GGCGGGGTCGGTTCATCTCGAAATAGGCAGGTGGCCATACCGATGCCACC
ACCAGAGCCTAGCTCCGGACTTTCGACCTCAGACTCGCTGACCAGTGTGC
CGGGTATGGCAAAGAGAATTGACCAGTACTCGGCCACCACCAATGGCAAC
ACTGGGAACAAACGACTCCTGACCCTAGAGACGCCGCGCATCGAAAATGA
ACGCCTGCCCGCGTGCGAGGATTGACCAACCTGGGCATACATGCTTCTTA
ATGCGTGATGCAGTGCCTCGCCAGACGCGTCTACTAGCGTACTGAAAGAC
TGTCGGAGCCCGGAGAAAGATTCATCTTACTGGCGACGTTCACATAAAGA
CAAGTGAATTGAACTGCATGATCAGTACCTGTTCCCTTGGGGTGACTCCG
GCGCGTTAGCCAATGCCTTGGAGAGAACTTCGA
UFO01172.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4165-RF | 4454 | CG4165-RF | 201..1355 | 51..1179 | 5035 | 97 | Plus |
| CG4165-RE | 4093 | CG4165-RE | 153..1307 | 51..1179 | 5035 | 97 | Plus |
| CG4165-RB | 4066 | CG4165-RB | 126..1280 | 51..1179 | 5035 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5423115..5423697 | 444..1022 | 2715 | 99.3 | Plus |
| X | 23542271 | X | 5422621..5423017 | 51..447 | 1985 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:52:23 has no hits.
UFO01172.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:03:26 Download gff for
UFO01172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4165-RC | 143..1182 | 51..1080 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:01 Download gff for
UFO01172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4165-RB | 126..1165 | 51..1080 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:22 Download gff for
UFO01172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4165-RB | 126..1165 | 51..1080 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:22 Download gff for
UFO01172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5422609..5423017 | 44..447 | 98 | -> | Plus |
| X | 5423119..5423750 | 448..1069 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:01 Download gff for
UFO01172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5316642..5317050 | 44..447 | 98 | -> | Plus |
| arm_X | 5317152..5317783 | 448..1069 | 98 | -> | Plus |
