UFO01175.5prime Sequence
1213 bp (1048 high quality bases) assembled on 2008-07-09
> UFO01175.5prime
ATCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGT
CGACATGGCCGACGAAAGTCTGCACACCGTGCCCCTGGAGCACAACATAG
ACTACCACATCGTGACGCTATTCGAGCGCCTGGAGGCGATGCGTAAGGAC
TCGCACGGCGGTGGCCACGGGGTCAACAATCGCCTGTCCAGCACCCTGCA
GGCTCCCAAGCGGAGCATGCAGGCTGAGATTCGCACGCTGGAGTTTTGGA
GATCCATCATCAGCGAGTGTCTGGCCTCCTTCATGTACGTGTTCATCGTC
TGCGGTGCCGCCGCTGGCGTCGGAGTGGGGGCCAGTGTGTCGTCCGTGCT
TTTGGCCACGGCTCTGGCCTCCGGCCTGGCGATGGCTACACTGACGCAGT
GCTTCCTCCACATCTCGGGCGCCCACATCAATCCCGCCGTAACCCTGGCT
CTATGCGTAGTGCGATCCATATCTCCGATCCGGGCTGCCATGTACATAAC
CGCACAATGTGGCGGAGGAATCGCCGGAGCTGCTCTGCTTTATGGCGTAA
CTGTGCCTGGTTACCAGGGGAATCTGCAGGCCGCCATCTCACATAGCGCT
GCTCTGGCCGCCTGGGAAAGATTCGGTGTGGAATTCATCCTCACCTTTCT
GGTGGTTCTGTGCTATTTCGTATCCACGGATCCCATGAAGAAGTTCATGG
GCAATTCGGCCGCCTCGATTGGATGTGCTTACAGCGCCTGCTGCTTTGTG
TCGATGCCGTACCTGAATCCAGCCCGCTCCCTGGGTCCTTCGTTTGTGCT
TAACAAATGGGACAGCCATTGGGTGTACTGGTTCGGACCACTGGTGGGCG
GCATGGCCTCTGGCCTGGTGTACGAGTACATCTTCAACTCGCGCAACCGC
AACCTGCGCCACAACAAGGGCAGCATCGACAACGATTCCAGTTCGATTCA
CTCGGAGGACGAACTGAACTACGACATGGATATGGAGAGCCCAACAAGTA
TCAGCAGTCGCAGGCACCTACCCGCGTGTAGTCATGCAATGGCGGAGGAC
GCGCCAATGGTCAGCACAAGCTGCACATGGGCCAAATGCTGCGTATGTCA
ATGCCGTCAGGCAATACTGCAAATCTGTAACCTGTCTCGCGCCTCCCGAA
TAGAATCAGCACGACCTTGTAACGGGTGAAGCCGCCTCACAGTAAACGTG
CGCGCCGTTGGCT
UFO01175.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bib-RB | 3276 | CG4722-RB | 302..1356 | 51..1089 | 4905 | 98.3 | Plus |
bib-RA | 3276 | CG4722-RA | 302..1356 | 51..1089 | 4905 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9993266..9993543 | 753..1028 | 1290 | 99.3 | Plus |
2L | 23513712 | 2L | 9992254..9992462 | 545..753 | 1045 | 100 | Plus |
2L | 23513712 | 2L | 9984946..9985146 | 51..251 | 1005 | 100 | Plus |
2L | 23513712 | 2L | 9986787..9986956 | 250..419 | 850 | 100 | Plus |
2L | 23513712 | 2L | 9987600..9987727 | 418..545 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:52:47 has no hits.
UFO01175.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:03:29 Download gff for
UFO01175.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bib-RA | 292..1354 | 43..1089 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:07 Download gff for
UFO01175.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bib-RA | 294..1356 | 43..1089 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:31 Download gff for
UFO01175.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bib-RA | 294..1356 | 43..1089 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:31 Download gff for
UFO01175.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9984944..9985146 | 50..251 | 99 | -> | Plus |
2L | 9986789..9986955 | 252..418 | 100 | -> | Plus |
2L | 9987601..9987727 | 419..545 | 100 | -> | Plus |
2L | 9992255..9992462 | 546..753 | 100 | -> | Plus |
2L | 9993267..9993618 | 754..1089 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:07 Download gff for
UFO01175.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9984944..9985146 | 50..251 | 99 | -> | Plus |
arm_2L | 9986789..9986955 | 252..418 | 100 | -> | Plus |
arm_2L | 9987601..9987727 | 419..545 | 100 | -> | Plus |
arm_2L | 9992255..9992462 | 546..753 | 100 | -> | Plus |
arm_2L | 9993267..9993618 | 754..1089 | 94 | | Plus |