UFO01176.5prime Sequence
1150 bp (1004 high quality bases) assembled on 2008-07-09
> UFO01176.5prime
GCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGAC
ATGGACGAGCACACGTTAAACGACCTGTTGGAGTGCTCCGTGTGTCTTGA
GCGACTGGACACCACATCGAAGGTGCTGCCATGCCAGCACACCTTCTGCC
GCAAATGCTTGCAGGACATTGTGGCCAGTCAGCACAAGTTGCGATGCCCG
GAGTGCCGCATCCTGGTCTCTTGCAAAATTGATGAGCTGCCTCCAAACGT
CTTGCTGATGCGAATCTTAGAAGGCATGAAACAAAATGCAGCAGCTGGCA
AAGGAGAAGAAAAGGGAGAGGAGACTGAAACACAGCCGGAAAGGGCCAAA
CCTCAGCCGCCAGCGGAATCAGTGGCCCCGCCTGACAACCAACTACTCCA
GCTGCAGTCACATCAGCAATCTCATCAGCCGGCTCGTCACAAGCAACGTC
GATTTCTACTCCCCCACGCCTATGCCCTCTTTGACTTCGCCTCCGGTGAA
GCCACCGATCTAAAGTTCAAGAAAGGGGATCTGATACTGATCAAGCATCG
CATCGACAACAACTGGTTTGTGGGTCAAGCGAATGGTCAGGAGGGCACAT
TTCCCATCAACTACGTCAAGGTATCGGTTCCGCTGCCCATGCCGCAGTGC
ATTGCCATGTATGACTTTAAGATGGGGCCCAACGACGAGGAGGGATGCCT
CGAATTTAAGAAAAGCACTGTAATACAGGTAATGCGCCGAGTTGATCATA
ATTGGGCAGAAGGACGAATTGGCCAGACCATCGGAATCTTTCCAATAGCA
TTCGTTGAGCTGAATGCAGCGGCCAAAAAGCTGTTGGACAGCGGGCTACA
CACCCATCCATTCTGCCATCCACCGAAGCAACAGGGGCAGCGGGCCCTTC
CTCGGTTCCAGTTATTGATCCCACGGTGGTCACGGATCAGTTCGGGATCT
CATTCACGCGGGCAGCAGCATCAGCTCACATCAGCTCGATACTGCAGTCG
ATCACAATCTCACTGCGATACCCCCACATGTAGTAGCTCCGGATCGCGTC
TGTTCGTCCGGACAGGAGCTAGAAACGCTCCACACCACTATGCTGCTGGA
AGAGGACCCTAGTCGTGCACAGCATCGGTGATCTACTGCAGACTAGCGCT
UFO01176.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| POSH-RA | 3169 | CG4909-RA | 333..1364 | 51..1057 | 4575 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17569520..17570185 | 272..936 | 3280 | 99.8 | Plus |
| 2R | 25286936 | 2R | 17569064..17569178 | 51..165 | 575 | 100 | Plus |
| 2R | 25286936 | 2R | 17569243..17569355 | 162..274 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:39:47 has no hits.
UFO01176.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:01:46 Download gff for
UFO01176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| POSH-RA | 327..1233 | 51..956 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:34 Download gff for
UFO01176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| POSH-RA | 333..1239 | 51..956 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:02 Download gff for
UFO01176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| POSH-RA | 333..1239 | 51..956 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:02 Download gff for
UFO01176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17569064..17569177 | 51..164 | 100 | -> | Plus |
| 2R | 17569246..17569354 | 165..273 | 100 | -> | Plus |
| 2R | 17569522..17570205 | 274..956 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:34 Download gff for
UFO01176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13456569..13456682 | 51..164 | 100 | -> | Plus |
| arm_2R | 13456751..13456859 | 165..273 | 100 | -> | Plus |
| arm_2R | 13457027..13457710 | 274..956 | 99 | == | Plus |
