UFO01177.5prime Sequence
1245 bp (1076 high quality bases) assembled on 2008-07-09
> UFO01177.5prime
ATCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGT
CGACATGGACTCGCTCAAGTTACCAAAGGCCAACAGTGCCACCAGCAGTG
CCAGCGGCAGCAACAGCAACCTGTCCGGTTCGACTTCCGCGTCCGCATCC
GCAGCCACATCGCCTACATCGTCAGGAACTGCAGTGGGTGGCATTCTATC
CGGTGCCCCAAAATCGCCACCTGGCCTGGGCAGCAGCACCCCGATCTCGG
TGCGATTCAATGCCAACGAGGAGTCCCTGGACGACATCCTACAGTCCTTC
CATCACAGCAAGCATAGTCCCAGTGGAGGAGCGAGTGGCGGCGGAGATGC
CTCGCCCACATCGAATCTGCTCGGGATGAAGAACAACGGGCTGGGATTGG
TCGTGGGCAACTGTGACTCCCTCTCCAGCAGTCCATCGCAGCCCCAGATG
CATGCCGGATCCGCATCCCTCTTCGGCAACGACGAAGTTAGTCTGCGCAA
TAATTTCATGCAAGCCGGTGGTTTCTTCAATCGAAAAAGTTGCGGTGGCC
TGCCGAATCTCAATCTCAACAAGCCGCCCCAGCTCCACCAGCAACAGCAT
CAACAACAGCATCAGCAGCACCAGCAACATCAACAGCAGCAACAGCTCCA
TCAGCACCAACAGCAACTGTCGCCGAATCTGAGTGCCCTGCACCATCATC
ACCAGCAGCAGCAGCAGCTTCGGGAAAGCGGAGGATCACATAGCCCCTCG
TCGCCGGGTGGAGGAGGCGGAGGATCGCCGTACAACGGCTCTCAGGCGGG
CTGCAGCAGCGGCGGCATCTCGCCCATTCCTCCCCAGATGGGCGTGTCGC
CCAAATACCGTCGCAGCATATCCTTTCCCATCAAGGGCAACTCGCCCACA
GCTATCTATGGCAATATGCACATGGACGGCATGGGTAGTGGGCACATGAA
TATACCGACACTTTCGATTGGAAACGGTGGTGGTGGCGGATCTACTGGCA
TGGTCTCAGCCGGAGCAACTGGTGGCGGAGATGCGCCTATTTGGGCAACA
GCTATGGCAACATGATGACGTCAATGGACAATGCACCACGGGTGGCGCTG
ATAACTCACTGGTGGCGAATTATATGCCCCACATGTCGCTTGGGAGTGAA
ATTGGGTGGGCGCAATGCAGCCACGCATTTCTTAAGGCCAGAACAGGATG
CGCGTGTGTAAGGGGCGGAATCGCGAGAGACCACTCTCGTGGGCC
UFO01177.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| orb2-RB | 3116 | CG43782-RB | 421..1573 | 54..1206 | 5215 | 97.5 | Plus |
| orb2-RH | 8400 | CG43782-RH | 494..1646 | 54..1206 | 5215 | 97.5 | Plus |
| orb2-RC | 4187 | CG43782-RC | 494..1646 | 54..1206 | 5215 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8943966..8944522 | 1091..538 | 2635 | 99.5 | Minus |
| 3L | 28110227 | 3L | 8948883..8949281 | 477..79 | 1995 | 100 | Minus |
| 3L | 28110227 | 3L | 8947828..8947889 | 539..478 | 310 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:39:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6882 | 580..738 | 343 | 70.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2361..2517 | 567..721 | 330 | 69.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2469 | 567..718 | 327 | 70.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6911 | 567..718 | 316 | 68.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2427 | 591..718 | 257 | 69.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6824 | 617..718 | 212 | 68.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2835..2979 | 574..718 | 211 | 62.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1163 | 611..715 | 192 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2748..2861 | 604..723 | 191 | 64.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1154 | 619..718 | 167 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6814 | 81..184 | 155 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6791 | 648..718 | 139 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6891 | 90..183 | 139 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6838 | 81..184 | 135 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6856 | 81..184 | 128 | 59.6 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3141..3309 | 544..718 | 122 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2456 | 81..184 | 119 | 58.7 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 635..728 | 724..628 | 117 | 60.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2430 | 90..179 | 112 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1572 | 661..718 | 111 | 70.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2364 | 688..718 | 110 | 83.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1103..1142 | 81..120 | 110 | 75 | Plus |
UFO01177.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 14:59:20 Download gff for
UFO01177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb2-RC | 490..1584 | 51..1144 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:32 Download gff for
UFO01177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb2-RC | 491..1585 | 51..1144 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:30 Download gff for
UFO01177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb2-RC | 491..1585 | 51..1144 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:30 Download gff for
UFO01177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8943915..8944520 | 540..1144 | 97 | <- | Minus |
| 3L | 8947828..8947889 | 478..539 | 100 | <- | Minus |
| 3L | 8948883..8949280 | 80..477 | 100 | <- | Minus |
| 3L | 8949657..8949685 | 51..79 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:32 Download gff for
UFO01177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8937015..8937620 | 540..1144 | 97 | <- | Minus |
| arm_3L | 8940928..8940989 | 478..539 | 100 | <- | Minus |
| arm_3L | 8941983..8942380 | 80..477 | 100 | <- | Minus |
| arm_3L | 8942757..8942785 | 51..79 | 96 | | Minus |
