UFO01178.5prime Sequence
1216 bp (1036 high quality bases) assembled on 2008-07-09
> UFO01178.5prime
CTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCG
ACATGATCCGAGAGAGAATCATCGACTTGGAGGCAAATATCGAAAGACGT
TACTTGAAGCCGCCTTTGGGCTCGCAGACAGGCGATGCCCATTTGGCGGT
TATTGCTCAGAACCAGCATACCACCACCCAGACGCAGAACTCTGCATCGG
CAGCAGCATATCTCCTGCAGATGCAACAGCAGCAGCAGCAACAGCAGTTG
GCCCAGCAGCAGCAGCAACAGCAACAGGGTTCGGGTGCGGGAAATAGCCT
GAATCCCTCATCCTTCAACGAGCGTACTATGGCATTGGCGGCGGCAGCAG
CTGCTTCGGGGCCAGGAAACGCAACCGGAGTAGCCAACTCGGCAGTCGTG
GCAGGAGCCACGCCCTGCGAATCGGGCAGCGGAGAACCGAATTCCGGCAA
CGCGTCACCGGCCAGCAACTGTGACAGCGATCGGGACGAGAAGGTGGAGC
AGATACCCAAGGGATTGGTGCAGTGGCGGGACGCAGTATCCCGATCGCAC
ACCACCGCCCAGCTGGCGATGGCCCTGTACGTTCTGGAATCCTGCGTGGC
TTGGGACAAGAGCATTATGAAAGCGAATTGCCAGTTCTGCACGTCCGGCG
AAAACGAGGACAAGTTGCTACTGTGCGACGGCTGTGACAAGGGCTATCAC
ACCTATTGCTTCAAGCCCAAGATGGACAACATTCCCGATGGCGATTGGTA
CTGCTACGAGTGCGTGAACAACGCCACCAATGAGCGCAAGTGCATCGTTT
GCGGCGGTCATCGTCCGTCGCCCGTGGGGAAGATGATCTACTGTGACTTG
TGTCCTCGTGCCTACCACGCCGATTGCTATATACCGCCGCTGCTAAAGGT
ACCGCGTGGCAAGTGGTACTGCCACGGTTGCATCTCCCGGGCGCCTCCGC
CGAAGAAGAAGTGCAGGTGGAACATCCGGCAGCAGCAGCAAATCTAGGAG
GACAGGGAAAGGGAGTCGGGCGGATCGCAAGCGCGTACGACAACAGCAAG
AAACAGCATGGAGCACATGCAGCAGCAGCAAATGCCACTGCAGGCGGGAT
TCCACATCATCATCATTCAGCAGGCGGCGTCCTGAATCTCTGCAGGATGA
TCATGATTCTTGCGGGACTCCTGATCCGCGCAACTCGGTGTTCCTCGGCC
CGAACTATCAAAGTGT
UFO01178.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tou-RA | 10470 | CG10897-RA | 7471..8568 | 52..1136 | 5050 | 98.1 | Plus |
| tou-RG | 10721 | CG10897-RG | 7326..7899 | 52..625 | 2870 | 100 | Plus |
| tou-RF | 11743 | CG10897-RF | 6953..7526 | 52..625 | 2870 | 100 | Plus |
| tou-RG | 10721 | CG10897-RG | 8295..8819 | 625..1136 | 2185 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11583015..11583588 | 625..52 | 2870 | 100 | Minus |
| 2R | 25286936 | 2R | 11581020..11581399 | 1116..747 | 1340 | 94.5 | Minus |
| 2R | 25286936 | 2R | 11581626..11581750 | 749..625 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:16:39 has no hits.
UFO01178.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:01:47 Download gff for
UFO01178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tou-RA | 7249..8357 | 43..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:30 Download gff for
UFO01178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tou-RA | 7463..8571 | 43..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:03 Download gff for
UFO01178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tou-RA | 7463..8571 | 43..1140 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:03 Download gff for
UFO01178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11581028..11581398 | 748..1104 | 95 | <- | Minus |
| 2R | 11581628..11581749 | 626..747 | 100 | <- | Minus |
| 2R | 11583015..11583596 | 43..625 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:30 Download gff for
UFO01178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7469133..7469254 | 626..747 | 100 | <- | Minus |
| arm_2R | 7468533..7468903 | 748..1104 | 95 | <- | Minus |
| arm_2R | 7470520..7471101 | 43..625 | 99 | | Minus |
