UFO01179.5prime Sequence
1191 bp (1033 high quality bases) assembled on 2008-07-09
> UFO01179.5prime
CTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCG
ACATGTTCATCGAAGACGATGCGCAAATGGACAGCTTCTGGGTGCAGAGC
GCTATTGGCGCGATCAAGGCGATCGCCTTTGTCTACGACATCATCACCCT
TCCGGTTTACTTGGTGCTGCAGAAGCCCTGGAAACGCCGTCAGGACTCGC
GTCGCGTGAAGGCAAAGATCGTGCGGAATGATGACAATGAGCTGACCTAC
CGGACCACGGATCCACCACGGGATGTCCACGTGAAGATGCTGCAAGAGAA
TATCGATACCCTGGAGAAGGTATTCAACTATGTGGCCAAAACTTACACGT
CGAAGCGTTGTCTGGGCACCCGGCAGATCCTCAGCGAGGAGGATGAGGTG
CAGCAGAACGGTCGAGTCTTCAAGAAGTACAACCTCGGTGACTACAAGTG
GAAGACGTTCACCGAGGCGGAGCGCACGGCGGCTAATTTCGGGCGCGGTC
TGCGAGAACTTGGCCAGAAACCACGCGAGAACATTGTCATCTTTGCCGAA
ACGCGAGCCGAATGGATGATAGCTGCCCACGGATGCTTCAAGCAGGCTAT
GCCCATTGTCACTGTCTATGCTACGCTGGGCGATGATGGAGTTGCTCATT
GCATCACCGAAACGGAAGTCACCACGGTTATCACCTCCCATGATCTGCTG
CCCAAGTTTAAGACGCTGCTCGACAAATGCCCATTGGTGAAGACTATTAT
CTATATTGAGGATCAGCTGCAAAAGACAGAAACCACTGGCTTCAAGGAGG
GCGTCAAGATCTTGCCGTTTAACCAAGTTGTCAAGACAGGACAGGACAGT
AAATTTGAGCACGTTCCACCCAAAGGAGATGACATTGCCATTATCATGTA
CACTTCCCGGATCCACTGGCACACCTAAGGTGTCCTCCTCTCGCACAGAC
TGCATTGCGACATGAAGGATTTGTTGATATGTGCCTATCTATCGGATGAT
GTACTGATCGGATTCTGCCCTGCTCACGTTTTTGATGTTGCGGAAGTGTG
TGTCTCATGACTGCGTCATGGCTACTCGACCCCTGACTTGATCGACCTAG
CAGCAGATCATGCGGGGGCAGGGCGATGCCGGTCTGATCACTGCTGACTC
GGTGCGCGTAATGGATGCCAATTCCAAGGAATTAACGACCA
UFO01179.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acsl-RB | 3677 | CG8732-RB | 344..1447 | 53..1130 | 4815 | 97.1 | Plus |
| Acsl-RH | 3887 | CG8732-RH | 554..1657 | 53..1130 | 4815 | 97.1 | Plus |
| Acsl-RA | 3704 | CG8732-RA | 371..1474 | 53..1130 | 4815 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8678428..8678869 | 210..651 | 2195 | 99.8 | Plus |
| 2R | 25286936 | 2R | 8678928..8679134 | 651..857 | 1035 | 100 | Plus |
| 2R | 25286936 | 2R | 8676472..8676608 | 76..212 | 685 | 100 | Plus |
| 2R | 25286936 | 2R | 8680011..8680175 | 857..1015 | 435 | 94 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:38:21 has no hits.
UFO01179.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:03:30 Download gff for
UFO01179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)44DEa-RE | 239..1330 | 45..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:19 Download gff for
UFO01179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acsl-RA | 364..1455 | 45..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:51 Download gff for
UFO01179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acsl-RA | 364..1455 | 45..1114 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:51 Download gff for
UFO01179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8676472..8676607 | 76..211 | 100 | -> | Plus |
| 2R | 8678430..8678868 | 212..650 | 99 | -> | Plus |
| 2R | 8678928..8679134 | 651..857 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:19 Download gff for
UFO01179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4563977..4564112 | 76..211 | 100 | -> | Plus |
| arm_2R | 4565935..4566373 | 212..650 | 99 | -> | Plus |
| arm_2R | 4566433..4566639 | 651..857 | 100 | -> | Plus |
