UFO01183.5prime Sequence
1188 bp (1050 high quality bases) assembled on 2008-07-09
> UFO01183.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGGCGCCGAAATCCAGAAAGAAGAAGGCTCATGCCCGCTCCCTAACCT
GCTACTGCGATGGCAGTTGTCCGGACAATGTAAGCAATGGAACCTGCGAG
ACCAGACCCGGTGGCAGTTGCTTCAGCGCAGTCCAACAGCTTTACGATGA
GACGACCGGGATGTACGAGGAGGAGCGTACATATGGATGCATGCCTCCCG
AAGACAACGGTGGTTTTCTCATGTGCAAGGTAGCCGCTGTACCCCACCTG
CATGGCAAGAACATTGTCTGCTGCGACAAGGAGGACTTCTGCAACCGTGA
CCTGTACCCCACCTACACACCCAAGCTGACCACACCAGCGCCGGATTTGC
CCGTGAGCAGCGAGTCCCTACACACGCTGGCCGTCTTTGGCTCCATCATC
ATCTCCCTGTCCGTGTTTATGCTGATCGTGGCTAGCTTATGTTTCACCTA
CAAGCGACGCGAGAAGCTGCGCAAGCAGCCACGTCTCATCAACTCAATGT
GCAACTCACAGCTGTCGCCTTTGTCACAACTGGTGGAACAGAGTTCGGGC
TCCGGATCGGGATTACCATTGCTGGTGCAAAGAACCATTGCCAAGCAGAT
TCAGATGGTGCGACTGGTGGGCAAAGGACGATATGGCGAGGTCTGGCTGG
CCAAATGGCGCGATGAGCGGGTGGCCGTCAAGACCTTCTTTACGACCGAA
GAGGCTTCTTGGTTCCGCGAGACTGAAATCTATCAGACAGTGCTGATGCG
ACACGACAATATCTTGGGCTTCATTGCCGCCGATATCAAGGGTAATGGTA
GCTGGACACAGATGTTGCTGATCACCGACTACCACGAGATGGGCAGCCTA
CACGATTACCTCTCAATGTCGGTGATCAATCCGCAGAGCTGCAATTGCTG
GCGTTTTCGCTGGCCTCCGGATTGGCCACTGCACGACGAGATTTCGGACC
CCTGCAAACCAGCTATCGCTCATCGCGATATCAGAGCAGACATTTGGTCA
GCGATGGCATGCCTATGCTGACTCGGCTGCATGAGTACACTCGACTGATT
CATCCAATTGGCCAGATTCAGTTCGCACCGAGCTCATGTCCGAAATGGCA
TCAGACTGGATCAAGCAGTTGAAAGTCAACGGGCGGAA
UFO01183.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tkv-RD | 3616 | CG14026-RD | 991..1987 | 49..1038 | 4810 | 99.3 | Plus |
| tkv-RA | 2846 | CG14026-RA | 255..1217 | 83..1038 | 4640 | 99.3 | Plus |
| tkv-RB | 3129 | CG14026-RB | 538..1500 | 83..1038 | 4640 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5220635..5221401 | 1033..273 | 3560 | 98.8 | Minus |
| 2L | 23513712 | 2L | 5221463..5221651 | 273..85 | 945 | 100 | Minus |
| 2R | 25286936 | 2R | 8959513..8959637 | 721..845 | 190 | 76.8 | Plus |
| 2L | 23513712 | 2L | 5236336..5236372 | 85..49 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:46:12 has no hits.
UFO01183.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 14:59:17 Download gff for
UFO01183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tkv-RD | 979..2002 | 38..1053 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:10 Download gff for
UFO01183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tkv-RD | 983..2006 | 38..1053 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:29 Download gff for
UFO01183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tkv-RD | 983..2006 | 38..1053 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:29 Download gff for
UFO01183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5220635..5221400 | 274..1033 | 99 | <- | Minus |
| 2L | 5221463..5221650 | 86..273 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:10 Download gff for
UFO01183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5220635..5221400 | 274..1033 | 99 | <- | Minus |
| arm_2L | 5221463..5221650 | 86..273 | 100 | <- | Minus |
