UFO01186.5prime Sequence
1229 bp (1025 high quality bases) assembled on 2008-07-09
> UFO01186.5prime
ATCTGCGGCCGCATAACATCGTATAGCATACATTATACGAAGTTATCAGT
CGACATGACGACCAAGCACATCTATTCCACGACCAATTTATCAGATCTGC
AATTAAAGGAGCAGGGAAACTGCTTGTTTGCAGCCCGAAAATATGACGAC
GCAATAAATTGCTACTCAAAGGCCATCATAAAGAACCCCACAAACGCCAC
ATACTTCACAAACCGAGCCCTCTGCAACCTGAAACTGAAGAGATGGGAAC
TGTGCTGCCAGGATAGTCGGCGCGCCCTCGACATCGATGGGAATCTGTTG
AAGGGTCACTTCTTCCTGGGCCAAGGACTCATGGAAATCGACAACTTTGA
CGAGGCTATAAAGCACCTTCAACGGGCATACGATCTGTCCAAGGAGCAGA
AGCAAAACTTTGGGGATGATATTACACTACAGTTGCGACTAGCTCGCAAA
AAGCGCTGGAATGTTATGGAGGAGAAGCGAATACAGCAGGAAATCGAGCT
GCAAAGCTATTTAAATGGTCTAATAAAAGGGGACATGGAAAGCCGTTTGG
CCAATTTAAAGCTGAATGGAAATGTACACGATGAGCAGCTGAAAGACAAG
CAACAGGAAATTGAGCAAGAATGCGATGACCATATTAAGGAACTTAACAA
TATATTTTCTAAGGTTGACGAACGTCGAAAGAAACGTGAAGTTCCCGATT
TTCTATGTGGCAAAATAAGTTTTGAAATATTAACAGACCCTGTGATAACT
CCATCTGGAATTACGTATGAACGAAAAGATATAGAAGACACTTGCAGCGG
GTTGGACATTTCGATCCTGTGACACGCGTTAAGCTCACTCAGGATCAACT
AATACCAATTTTTCAATGAAGGAAGTGGTTGACTCTTTTATTGCCGAGAA
TGAATGGTCTTTAGATTATGCAAGCTTTCTAGACCATTCGTTTGGCGCGC
GGGCCCAGGTAAGTGGTCATATCATAATCATAATCATATCATAATCACAC
TAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAACAATAAA
AAAACGCTCGCGGCCACGAGCGTTCTGAACAATTCAGAATGGAGTTCTGA
GTCATTACTGATTCTATCACGGGAGTCAGCGAGCTCGAATCAAGTACGCT
CTGGCTGGCACTCATGCAGTACTGTTAAATTCATTAAGCATCTGTCCACA
GCATGGAAGCACATTACCAACCGCGGACA
UFO01186.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CHIP-RA | 1277 | CG5203-RA | 292..1158 | 55..919 | 4285 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10438880..10439121 | 680..919 | 1110 | 99.2 | Plus |
| 2L | 23513712 | 2L | 10438041..10438239 | 178..376 | 995 | 100 | Plus |
| 2L | 23513712 | 2L | 10438300..10438442 | 376..518 | 715 | 100 | Plus |
| 2L | 23513712 | 2L | 10437839..10437961 | 55..177 | 615 | 100 | Plus |
| 2L | 23513712 | 2L | 10438590..10438697 | 518..625 | 540 | 100 | Plus |
| 2L | 23513712 | 2L | 10438756..10438812 | 625..681 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:00:43 has no hits.
UFO01186.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:03:31 Download gff for
UFO01186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CHIP-RA | 281..1164 | 46..930 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:38 Download gff for
UFO01186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CHIP-RA | 284..1167 | 46..930 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:47:06 Download gff for
UFO01186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CHIP-RA | 284..1167 | 46..930 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:47:06 Download gff for
UFO01186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10437826..10437961 | 40..177 | 95 | -> | Plus |
| 2L | 10438041..10438239 | 178..376 | 100 | -> | Plus |
| 2L | 10438301..10438442 | 377..518 | 100 | -> | Plus |
| 2L | 10438591..10438696 | 519..624 | 100 | -> | Plus |
| 2L | 10438756..10438812 | 625..681 | 100 | -> | Plus |
| 2L | 10438882..10439130 | 682..930 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:38 Download gff for
UFO01186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10437826..10437961 | 40..177 | 95 | -> | Plus |
| arm_2L | 10438041..10438239 | 178..376 | 100 | -> | Plus |
| arm_2L | 10438301..10438442 | 377..518 | 100 | -> | Plus |
| arm_2L | 10438591..10438696 | 519..624 | 100 | -> | Plus |
| arm_2L | 10438756..10438812 | 625..681 | 100 | -> | Plus |
| arm_2L | 10438882..10439130 | 682..930 | 97 | == | Plus |
