UFO01187.5prime Sequence
1203 bp (1031 high quality bases) assembled on 2008-07-09
> UFO01187.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGATCTGGTCTGGCAACGCCAGATATTCAAATGTTCAGAATTCGAGCA
TGGTGCCTCCGTCACGACCCAATGTCACCCGTCTGTCGGACGAGTCCGTG
ATGCTGCGCTGGAGTGTGCCACAAAACTCTGGACTCCAGATCACCTTTTT
CAAGGTGCAGTATCGCATGTTGGGCGACGGAAAAAATCGGAGGAAGAACT
GGCAGACGACCAGCGACAATATCCCGTACGGAAACGCGCACGGATCCGGG
CCTGGCCAGGGGAACAGTCACTGGCGGGCGCGGAACCGGGACAGGGAGTA
TGAAATGGGCAATCCGCCCAAGAACTTCACCTCCTCCGTTACGGGACTGA
CCGCCGGCAAGTACTACCGCTTCCGGATCGTGGCGGTGTACTCCAATAAC
GACAACAAGGAGGGCAACACCTCCCTCAAGTTCTTCCTGCAGAATGGAAC
GTCCAAGTCGAATCTGCCAGTGCCGGAACTACGCGAGGTGGAGACGCTTT
CCGAGTCGGCCGTGGTGCTCCATTGGTCCCTGGTATCCTCGACTCAAAAT
GAGGATATAGACGGGTACTATGCCTACTATAGGCCAGCGGACTCAGCAGC
GGAGTATTTGAAGGCCACGGTGGATGGCGGAATGAGCAGGAGCTTCAAGA
TAGACCTCCTTCGTCCAGGAACCCCTTATGAGTTCAAATTGCAATCGTTC
AACTCCGACGCAGCCTCTGAATTCAGTGCTATTCGGCAAGCGAGGACCAG
AAAAACGCACGAGCAACCGGCTTCATCTTCGGCCACGCCAGTGCCAGCCA
ATAAGGCAGTGGAACAGCACCAGAACTCCTTATATCCACTGATCGCAGTG
CCGCTGGCGGAGGCATACTACTCTTCATCGCCTCATTGGTGGTCTGCTTT
GCCTAAAGAGACGGGAAAACTCCTCAGCGGAGGATGAGAACAAACCGCCA
ATTGGAACACATTCAAGCGGACTTTGTTACTCGCGTCCTGGGAGTTGGTG
GCACCCAAAGTGCGATGTAAGGCGCCTCACGGATGATCGAGATGAATATT
ACGCCCATCCGCTGACAGGACGCATCGATAAAACCCCTTGGACTGCACGA
TGGCATCCCACGCCAGGCGTACCATCGGCTGTGACGCCCCAACTCTGTGA
GTG
UFO01187.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| boi-RA | 2721 | CG32796-RA | 194..1270 | 52..1114 | 4940 | 98.2 | Plus |
| boi-RG | 4544 | CG32796-RG | 1739..2772 | 95..1114 | 4725 | 98.2 | Plus |
| boi-RF | 4509 | CG32796-RF | 2025..3058 | 95..1114 | 4725 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2446890..2447597 | 802..95 | 3540 | 100 | Minus |
| X | 23542271 | X | 2446653..2446824 | 972..803 | 745 | 98.3 | Minus |
| X | 23542271 | X | 2447657..2447699 | 94..52 | 215 | 100 | Minus |
| X | 23542271 | X | 2446532..2446578 | 1030..983 | 190 | 97.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:52:20 has no hits.
UFO01187.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:01:48 Download gff for
UFO01187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| boi-RA | 183..1274 | 41..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:21 Download gff for
UFO01187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| boi-RA | 183..1274 | 41..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:40 Download gff for
UFO01187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| boi-RA | 187..1278 | 41..1120 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:40 Download gff for
UFO01187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2446642..2446824 | 803..983 | 97 | <- | Minus |
| X | 2446890..2447597 | 95..802 | 100 | <- | Minus |
| X | 2447657..2447706 | 41..94 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:21 Download gff for
UFO01187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2340675..2340857 | 803..983 | 97 | <- | Minus |
| arm_X | 2340923..2341630 | 95..802 | 100 | <- | Minus |
| arm_X | 2341690..2341739 | 41..94 | 92 | | Minus |
