UFO01188.5prime Sequence
1225 bp (1016 high quality bases) assembled on 2008-07-09
> UFO01188.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGGGTCTGCTATCGCTGTTGCGTAAACTGAGACCCAATCCGGAAAAGG
AGGCTCGCATCCTGCTCCTAGGATTGGATAATGCTGGCAAGACCACGATA
CTGAAGCAGCTGGCATCGGAGGACATAACCACGGTAACGCCCACGGCAGG
ATTTAACATCAAGTCCGTGGCAGCCGATGGTTTCAAACTGAATGTATGGG
ATATTGGTGGTCAATGGAAGATACGTCCATATTGGAAGAACTATTTTGCG
AATACTGATGTGCTGATCTATGTAATTGACTGTACAGATCGGACTCGCCT
GCCCGAGGCGGGTAGTGAACTATTCGAAATGCTCATGGACAATCGGTTGA
AGCAAGTTCCCGTGCTGATTTTCGCTAACAAACAGGATATGCCGGATGCC
ATGAGTGCCGCCGAGGTGGCCGAGAAGATGAGCTTGGTGCAACTGCAGGG
ACGAACCTGGGAGATCAAGGCCTGTACCGCTGTGGATGGCACTGGACTAA
AGGAGGGAATGGACTGGGTCTGCAAGAATATGAAGAAGGCAAGCTTTCTA
GACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCA
TAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAG
TGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTG
AACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAG
TCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAG
TACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAAC
GGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGTCTTGCG
TATAATATTTGCTCATGGTGAAAACGGGGGGCCGAAGAGTGTCCATATTG
CCACGTTTAAATCAAAACTGTGAAACTCACCCAGGGATGCTGAAACGAAA
AACATATTCTCATAAACCCTTTAGGAAATAGCCAGCTTCACCGTAACCGC
CAATCTTGCAATATATGTGTAGAAACCTGCGAATCGTCATGCATTCCCCC
TCACAAGAGCGGATGAACCGTTCAATGCTCATAGGAAACGGTACAAGGTC
AACCTATCCAATTCACGGTCTAACG
UFO01188.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dnd-RA | 836 | CG6560-RA | 214..750 | 52..588 | 2685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21885762..21886035 | 588..315 | 1370 | 100 | Minus |
| 3R | 32079331 | 3R | 21886093..21886225 | 315..183 | 665 | 100 | Minus |
| 3R | 32079331 | 3R | 21886286..21886417 | 185..54 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:00:35 has no hits.
UFO01188.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:06:22 Download gff for
UFO01188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6560-RA | 210..752 | 52..595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:35 Download gff for
UFO01188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dnd-RA | 214..756 | 52..595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:47:02 Download gff for
UFO01188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dnd-RA | 214..756 | 52..595 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:47:02 Download gff for
UFO01188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21885762..21886034 | 316..588 | 100 | <- | Minus |
| 3R | 21886093..21886224 | 184..315 | 100 | <- | Minus |
| 3R | 21886288..21886417 | 54..183 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:35 Download gff for
UFO01188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17711815..17711946 | 184..315 | 100 | <- | Minus |
| arm_3R | 17712010..17712139 | 54..183 | 100 | | Minus |
| arm_3R | 17711484..17711756 | 316..588 | 100 | <- | Minus |
