UFO01189.5prime Sequence
1189 bp (1043 high quality bases) assembled on 2008-07-09
> UFO01189.5prime
TCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTC
GACATGTGTGACGAAGAAGTTGCTGCTCTGGTTGTCGACAACGGCTCTGG
CATGTGCAAGGCCGGATTTGCCGGAGACGATGCTCCCCGCGCCGTCTTCC
CATCGATTGTGGGACGTCCCCGTCACCAGGGTGTGATGGTCGGCATGGGC
CAGAAGGACTCGTACGTGGGTGATGAGGCGCAGAGCAAGCGTGGTATCCT
CACCCTGAAGTACCCCATTGAGCACGGTATCGTGACCAACTGGGACGATA
TGGAGAAGATCTGGCACCACACCTTCTACAATGAGCTGCGTGTGGCACCC
GAGGAGCACCCCGTGCTGCTGACCGAGGCCCCGCTGAACCCCAAGGCCAA
CCGTGAGAAGATGACCCAGATCATGTTCGAGACCTTCAACACACCCGCCA
TGTATGTGGCCATCCAGGCTGTGCTCTCGCTGTACGCCTCCGGTCGTACC
ACCGGTATCGTTCTGGACTCCGGCGATGGTGTCTCCCACACCGTGCCCAT
CTACGAGGGTTATGCCCTTCCCCATGCCATCCTGCGTCTGGATCTGGCTG
GTCGCGATTTGACCGACTACCTGATGAAGATCCTGACCGAGCGCGGTTAC
TCTTTCACCACCACCGCTGAGCGTGAAATCGTCCGTGACATCAAGGAGAA
GCTGTGCTATGTTGCCCTCGACTTTGAGCAGGAGATGGCCACCGCTGCCA
GCAGCTCCTCGTTGGAGAAGTCCTACGAGCTGCCCGACGGACAGGTGATC
ACCATCGGCAACGAGCGTTTCCGCTGCCCCGAGGCCCTGTTCCAGCCCTC
GTTCTTGGGAATGGAGGCTTGCGGCATCCACGAGACCACCTACAACTCCA
TCATGAAGTGTGATGTGGATATCCGTAAGGATCTGTATGCCAACACCGTG
CTGTCCGGTGCACCACCATGTACCCTGGCATCGCCGACGTATGCAGAGGA
GATCACCGCCCTGGCACCGTCGACATGAGATCAGATCATGCCCCGCCAGA
GCGCAGTACTCTGTCTGATCGGTGCTCATCTGCCTCCTGTCCACTCAGCG
ATGTGATCTCAGCAGATCGACGAGTCGTCCTCATGGACCGAAGGCTCCAA
GCTTCTAACATTCTTTGGCGCGCGGGCCAGATAATGGTG
UFO01189.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Act5C-RE | 2863 | CG4027-RE | 162..1191 | 54..1074 | 4925 | 99.1 | Plus |
| Act5C-RD | 1928 | CG4027-RD | 162..1191 | 54..1074 | 4925 | 99.1 | Plus |
| Act5C-RC | 2252 | CG4027-RC | 162..1191 | 54..1074 | 4925 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5902698..5903671 | 54..1024 | 4720 | 99.7 | Plus |
| 3R | 32079331 | 3R | 13426604..13427574 | 54..1021 | 3340 | 90.3 | Plus |
| 2R | 25286936 | 2R | 20944843..20945768 | 93..1015 | 3280 | 91 | Plus |
| 3R | 32079331 | 3R | 15440616..15441541 | 54..978 | 2915 | 87.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:40:29 has no hits.
UFO01189.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 14:59:21 Download gff for
UFO01189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Act5C-RC | 159..1202 | 54..1085 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:49 Download gff for
UFO01189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Act5C-RA | 162..1205 | 54..1085 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:29 Download gff for
UFO01189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Act5C-RC | 162..1205 | 54..1085 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:29 Download gff for
UFO01189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5902698..5903752 | 54..1094 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:49 Download gff for
UFO01189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5796731..5797785 | 54..1094 | 98 | <- | Plus |
