UFO01190.5prime Sequence
1203 bp (1037 high quality bases) assembled on 2008-07-09
> UFO01190.5prime
ATCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGT
CGACATGATGAGCCTGACTGTGCTCTCGCCACCGCAACGTTTTAAGCGAA
TCCTGCAAGCCATGATGTTAGCCGTCGCCGTCGTCTATATGACCCTACTG
CTCTACCAGAGCGCCTACGGATATCCGGGCATCCAAGTGCCGCACAGCCA
GGTGGATGCCCTTGCCAGCGAAGCCGTGACCACACATCGCGACCAGCTGC
TCCAGGACTACGTGCAGTCCTCCACGCCCACCCAGCCGGGGGCTGGAGCT
CCGGCCGCCTCCCCCACCACCGTCATAATCCGCAAGGATATACGCAGCTT
CAATTTCAGCGACATCGAGGTCAGTGAGCGGCCCACGGCCACGCTGCTAA
CAGAATTGGCCAGAAGGAGCCGGAATGGGGAACTGCTCCGCGATCTGTCC
CAAAGAGCGGTGACGGCGACACCACAGCCGCCGGTCACCGAGTTGGATGA
CATTTTCATCAGCGTAAAGACGACGAAGAACTATCACGACACCCGGCTGG
CGTTGATCATCAAGACCTGGTTCCAATTGGCCCGCGATCAGACCTGGTTC
TTCACGGACACCGATGATCACTACTACCAGGAGAAGACAAAGGGCCATCT
CATCAACACGAAATGCTCACAGGGCCATTTTCGCAAGGCGCTTTGCTGCA
AAATGTCCGCTGAATTGGATGTCTTCCTGGAGAGTGGCAAAAAGTGGTTC
TGTCACTTCGACGATGACAACTATGTCAATGTGCCGAGGCTGGTCAAACT
GCTGGACGAGTATAGCCCCAGTGTGGATTGGTATCTGGGCAAGCCGAGCA
TCTCGTCGCCGCTGGAGATCCACTTGGACAGCAAGAACACGACAACAAAC
AAGAAGATAACCTTCTGGTTCGCCACTGGGCGGCGCTGGCTTCTGCCTCA
GTCGAGCCCTGACTTTAAAAATGCTACCCATAGCAGGTGGTGCAAGTTTA
TCAGCATTGGCGACAAGAATACGTTTTCGGATGATGTCACATGGGTTTTA
TTATGACACCTCTGAAAGTCTCTAACGTGATGACACTTCCACTCGCATTT
GAGCCCATGAGTCCATCGCAAGAATCGTCAAGAACAGGGTTCCTTACGGC
TTTGGCCCTGATGGAAAAACAAGGAACGTGTATCAGGGTGGAACGGCCTT
CGC
UFO01190.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fng-RA | 1959 | CG10580-RA | 212..1362 | 55..1192 | 4985 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20943564..20943968 | 591..187 | 2025 | 100 | Minus |
| 3L | 28110227 | 3L | 20927709..20927847 | 882..744 | 695 | 100 | Minus |
| 3L | 28110227 | 3L | 20949167..20949301 | 189..55 | 675 | 100 | Minus |
| 3L | 28110227 | 3L | 20926701..20926873 | 1054..883 | 630 | 94.8 | Minus |
| 3L | 28110227 | 3L | 20935411..20935515 | 745..641 | 525 | 100 | Minus |
| 3L | 28110227 | 3L | 20936666..20936717 | 640..589 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:43:42 has no hits.
UFO01190.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:03:33 Download gff for
UFO01190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fng-RA | 206..1288 | 51..1122 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:15 Download gff for
UFO01190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fng-RA | 209..1291 | 51..1122 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:42 Download gff for
UFO01190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fng-RA | 209..1291 | 51..1122 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:42 Download gff for
UFO01190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20926699..20926873 | 883..1055 | 96 | <- | Minus |
| 3L | 20927709..20927847 | 744..882 | 100 | <- | Minus |
| 3L | 20935413..20935515 | 641..743 | 100 | <- | Minus |
| 3L | 20936666..20936714 | 592..640 | 100 | <- | Minus |
| 3L | 20943564..20943968 | 187..591 | 100 | <- | Minus |
| 3L | 20949170..20949304 | 51..186 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:15 Download gff for
UFO01190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20919799..20919973 | 883..1055 | 96 | <- | Minus |
| arm_3L | 20920809..20920947 | 744..882 | 100 | <- | Minus |
| arm_3L | 20928513..20928615 | 641..743 | 100 | <- | Minus |
| arm_3L | 20929766..20929814 | 592..640 | 100 | <- | Minus |
| arm_3L | 20936664..20937068 | 187..591 | 100 | <- | Minus |
| arm_3L | 20942270..20942404 | 51..186 | 98 | | Minus |
