UFO01192.5prime Sequence
1213 bp (1058 high quality bases) assembled on 2008-07-09
> UFO01192.5prime
CTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCG
ACATGGGTCTTAGGTCCCTGCGCATTTCCACAACGCAATCCGATTCCGCG
TGCAGCAGTTCGGCGGAATCGTCGGATTGCGAGAGCTCCAGCCACCATCA
CCACCACCACAGTCACCACAACTACAACGAGGCGCCCGTGGAGATAATCC
CTGGACTACTCTTCCTGGGAAATGCCACACACAGCTGCGACTCGGAAGCG
TTGAAAAAGTACAATATAAAGTATGTTTTGAATGTGACACCAGATTTGCC
AAATAAGTTCAAGGAGTCGGGCGACATCAAGTATCTGCAGATTCCGATCA
CGGATCACTACTCACAAGATTTGGCCATACATTTCCCGGATGCCATACAG
TTTATAGAGGAAGCGCGGTCCGCAAGCTCGGTGGTGCTGGTCCACTGCCT
GGCCGGAGTTTCGCGCTCGGTGACCGTGACGCTCGCCTACTTGATGCACA
CGCGGGGCCTGAGTCTCAACGACGCCTTCGCGATGGTGCGGGACCGGAAG
CCGGATGTATCGCCCAACTTCCACTTCATGCAGCAGCTGCTGTCCTTCGA
GAGCCAACTGCGCCTGAGACCCGGCTCCAGGTTCTCGTGCAGCTGCATTG
CGCCGGACTGCAATTGCATGCAGACCACGGGCTTTATGGCCACCCATCTG
GCGAATGCTACCGGGGTCTCGCCAGACTCCGGCATCGAGTTCGATCGCTG
GACCCCGTCGGACACGGGTCTTAAAGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCAT
AATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTC
ACCATAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAGCGAGCTCGAT
ATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTGTAATCATAG
CATTCTGCCGACATGCAGCATCACAAACGCATGATGACTGATCGCAGCGC
ATCAGCCCTTGTCGCCTTGCTATTAAATTTGCCATGTGAACGGGGGAGAA
TGGCCATTGGCAGTAATCGAACTGGTAACTCACCCAGGATGGGCGTGGAG
CCAACCATTTTTC
UFO01192.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mkp3-RD | 4696 | CG14080-RD | 1214..1936 | 53..775 | 3615 | 100 | Plus |
| Mkp3-RC | 3119 | CG14080-RC | 1214..1936 | 53..775 | 3615 | 100 | Plus |
| Mkp3-RA | 2053 | CG14080-RA | 148..870 | 53..775 | 3615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19068915..19069284 | 775..406 | 1850 | 100 | Minus |
| 3L | 28110227 | 3L | 19069682..19069891 | 271..62 | 1050 | 100 | Minus |
| 3L | 28110227 | 3L | 19069487..19069624 | 407..270 | 690 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:13:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 1236..1272 | 142..177 | 110 | 81.1 | Plus |
UFO01192.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:01:50 Download gff for
UFO01192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mkp3-RA | 140..870 | 43..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:55 Download gff for
UFO01192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mkp3-RA | 140..870 | 43..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:31 Download gff for
UFO01192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mkp3-RA | 140..870 | 43..775 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:31 Download gff for
UFO01192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19068915..19069282 | 408..775 | 100 | <- | Minus |
| 3L | 19069487..19069622 | 272..407 | 100 | <- | Minus |
| 3L | 19069682..19069891 | 62..271 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:55 Download gff for
UFO01192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19062015..19062382 | 408..775 | 100 | <- | Minus |
| arm_3L | 19062587..19062722 | 272..407 | 100 | <- | Minus |
| arm_3L | 19062782..19062991 | 62..271 | 100 | | Minus |
