UFO01194.5prime Sequence
1173 bp (1010 high quality bases) assembled on 2008-07-09
> UFO01194.5prime
GCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGAC
ATGATAAAAGCCATTCTCGTTTTTAACAATCACGGGAAGCCGCGGCTATC
GAAGTTCTATCAGTATTTCGATGAAAGCCTGCAGCAACAAATAATCAAAG
AGACTTTCCAATTGGTGTCCAAGCGGGACGATAATGTTTGCAACTTTCTG
GAGGGCGGAAGTTTGATTGGCGGATCGGATTACAAACTCATCTACAGACA
CTATGCCACGCTGTACTTCGTTTTCTGCGTGGACTCCTCGGAGAGCGAAC
TGGGAATCCTGGACCTGATTCAGGTGTTCGTGGAAACCCTCGACAAGTGC
TTCGAAAACGTGTGTGAGCTGGACCTGATATTCCACGCCGATGCCGTCCA
CCACATCCTCTCAGAACTGGTAATGGGCGGAATGGTCCTGCAGACAAATA
TGAACGACATAATGGCCAGGATCGAGGAGCAGAACAAGATCGTCAAGCAG
GAAGCGGGCATCTCGGCTGCACCTGCCCGAGCTGTGAGCGCCGTGAAGAG
TATGAACATTCCGCAACAGATTAAAGACATCAAGCTACCTGATCTGCCGC
AGGCCATTAAGGACTTTAAGTTCGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCACAA
CTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAA
AAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCT
GAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAA
ATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGC
ATTCTGCCGACATGTAAGCCATCACAAACGGCATGATGACCTGATCGCAG
CGCATCAGCACTTGTCGCTTGCGTATATATTTGCCATGTGAAACGGGGCG
AAGAGTGTCATATGCACGTTATCAACTGTGAACTCACCAGAATGCTGAAC
GAAAACTATTCTCATACGTAAGGATAGGCCAGGTTTCACGTAACCGCAAT
CTGCATATGTCAACTTGCGAATCCTGATACCTCAAGCGTAAACGTTCAGT
GCTAGGACCGGTAACAGGGTGAC
UFO01194.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| or-RA | 823 | CG3029-RA | 75..654 | 44..623 | 2870 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23968562..23968774 | 411..623 | 1065 | 100 | Plus |
| 2R | 25286936 | 2R | 23968304..23968508 | 210..414 | 1025 | 100 | Plus |
| 2R | 25286936 | 2R | 23968153..23968244 | 120..211 | 460 | 100 | Plus |
| 2R | 25286936 | 2R | 23968013..23968089 | 44..120 | 355 | 97.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:00:32 has no hits.
UFO01194.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:06:16 Download gff for
UFO01194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| or-RA | 65..655 | 39..627 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:33 Download gff for
UFO01194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| or-RA | 70..660 | 39..627 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:47:01 Download gff for
UFO01194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| or-RA | 70..660 | 39..627 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:47:01 Download gff for
UFO01194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23968153..23968244 | 120..211 | 100 | -> | Plus |
| 2R | 23968306..23968508 | 212..414 | 100 | -> | Plus |
| 2R | 23968566..23968780 | 415..627 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:33 Download gff for
UFO01194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19855676..19855767 | 120..211 | 100 | -> | Plus |
| arm_2R | 19855829..19856031 | 212..414 | 100 | -> | Plus |
| arm_2R | 19856089..19856303 | 415..627 | 99 | == | Plus |
