UFO01195.5prime Sequence
1195 bp (1045 high quality bases) assembled on 2008-07-09
> UFO01195.5prime
CTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCG
ACATGGAGGACTACAAGTTCCTGTTCAAAATCGTCCTGGTGGGCAATGCT
GGTGTTGGAAAAACATGCCTAGTGCGCCGCTTTACTCAGGGTCTATTTCC
ACCTGGCCAGGGTGCCACCATTGGTGTGGATTTCATGATTAAGACCGTGG
AGGTGGAGGGCGAGAAGATCAAGCTACAAATCTGGGACACCGCCGGCCAG
GAGCGGTTCCGATCCATCACGCAAAGCTACTATCGATCGGCTCACGCCTT
GATCCTGGTGTACGACATCAGCTGCCAGCCCACATTTGACTGCCTGCCGG
ACTGGCTGCGCGAGATCCAGGAGTATGCCAACTCCAAGGTACTCAAAATC
CTGGTGGGTAACAAGACGGACAGGGATGATCGAGAGATACCCACCCAGAT
TGGCGAAGAGTTCGCCAAGCAGCATGACATGTACTTCTTGGAGACATCCG
CCAAGGAGGCAGAGAATGTAGAGCGTCTGTTCTACGAGATTGCCGCCGAA
TTGATTGGTCAGGCAAGGAGCAAGGATGGCAGTAGTTCGGCCGCAGCGGC
AGCCGCCCAGCGTCAGTCGGAGGGCAGCTCCATCGGACTGGGGAGCTTCA
GTGCCAAGGCAGCGCAGAGCAATTGCTGTGGCGGACTCGCCAGCGGCGGC
TCCAACTCTAGTCAAGGCGGCGCAAGCTTTCTAGACCATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATC
ACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCA
ATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAG
TTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATA
TCAATTACGCCCCGCCCTGCACTTCATCGCAGTACTGTTGTAATTCATTA
AGCATTCTGCCGAACATGCAGCCATCACAACGGCATGATGAACCTGAATC
GCAGCGCATCAGCACCTTGTCGCTTGGCGTATATATTTGCCCATGGTGAA
ACGGGGGCGAAAAGTTGTCGTATTGCACGTTAATCGAACTGGTAACTCCC
AGGATGGCTGAAACAAAACATATTCTTCAATAAAACCCTTTTTAG
UFO01195.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab30-RD | 1305 | CG9100-RD | 435..1103 | 53..721 | 3345 | 100 | Plus |
| Rab30-RC | 2055 | CG9100-RC | 443..1111 | 53..721 | 3345 | 100 | Plus |
| Rab30-RB | 1970 | CG9100-RB | 358..1026 | 53..721 | 3345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7031437..7032105 | 721..53 | 3345 | 100 | Minus |
| X | 23542271 | X | 20252273..20252324 | 209..260 | 215 | 94.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:34:08 has no hits.
UFO01195.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:06:18 Download gff for
UFO01195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab30-RC | 424..1105 | 45..727 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:52 Download gff for
UFO01195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab30-RB | 350..1031 | 45..727 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:28 Download gff for
UFO01195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab30-RB | 350..1031 | 45..727 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:28 Download gff for
UFO01195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7031432..7032113 | 45..727 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:52 Download gff for
UFO01195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7031432..7032113 | 45..727 | 98 | | Minus |
