UFO01201.5prime Sequence
1234 bp (1036 high quality bases) assembled on 2008-07-17
> UFO01201.5prime
GCATACATTATACGAAGTTATCAGTCGACATGGCTAAAGTTACTATCAAA
AATTTTCGGCAACAAGGAAATGCGAATTCTCATGCTCGGACTGGACGCGG
CTGGAAAAACAACGATTCTGTACAAACTGAAACTTGGCCAATCTGTTACA
ACGATACCCACTGTGGGCTTTAATGTGGAAACCGTCACCTATAAGAATGT
CAAGTTCAATGTGTGGGACGTCGGTGGGCAGGATAAGATTCGACCGCTAT
GGCGACACTATTACACGGGTACACAGGGTCTGATCTTCGTCGTGGATTGT
GCGGATCGGGATCGGATAGACGAGGCGCGCACGGAGCTGCATAGGATAAT
TAACGATAGGGAGATGCGCGACGCCATCATACTGATATTTGCTAACAAGC
AGGATCTGCCTGATGCAATGAAACCCCATGAAATCCAGGAAAAACTAGGT
TTAACTAGAATAAGAGATCGCAATTGGTATGTACAACCATCATGTGCCAC
ATCCGGCGATGGCCTGTCCGAGGGCCTCATTTGGTTAACGTCGAACCATA
AGTTAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGT
GGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAG
ATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGC
GGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACT
GGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGC
CCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACA
TGGAAACCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCA
GCACCTTGTCGCCTTGCGTATATATTTGCCCATGGTGAAAACGGGGGCGA
AGAAGTTGTCCATATTGGCCACGTTTAAATCAAGCTGGTGAAACTCCCCC
AGGGATTGGCTGAAGACCGAAAAACATATTTCTCAATTATGCTATAAGGG
AAATAGGCAAGTTTTCACGTAACACGCCCACATCTTTGCGAAATTATTGT
GTAGAAACTGCCCGAATTGGTCTGGTATTCACTCGAGCCGATGAAACGTT
TCAGTTGTCTAATGAACGTTACAGGTTGAAACATATTCCAATTCCACCGT
TCACCGGTTCTTTTCATTGTGCCCATTCTCAGAA
UFO01201.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arf51F-RE | 1357 | CG8156-RE | 287..806 | 36..555 | 2600 | 100 | Plus |
| Arf51F-RA | 1352 | CG8156-RA | 282..801 | 36..555 | 2600 | 100 | Plus |
| Arf51F-RC | 1370 | CG8156-RC | 300..819 | 36..555 | 2600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15323841..15324147 | 109..415 | 1520 | 99.7 | Plus |
| 2R | 25286936 | 2R | 15324201..15324341 | 415..555 | 705 | 100 | Plus |
| 2R | 25286936 | 2R | 15323489..15323565 | 36..112 | 385 | 100 | Plus |
| 3L | 28110227 | 3L | 22869850..22869953 | 158..55 | 220 | 80.8 | Minus |
| 4 | 1348131 | 4 | 1124442..1124648 | 92..298 | 210 | 73.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:23:00 has no hits.
UFO01201.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:51 Download gff for
UFO01201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arf51F-RC | 286..819 | 20..555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:23:28 Download gff for
UFO01201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arf51F-RD | 284..817 | 20..555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:02 Download gff for
UFO01201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arf51F-RC | 286..819 | 20..555 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:02 Download gff for
UFO01201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15323475..15323565 | 20..112 | 94 | -> | Plus |
| 2R | 15323845..15324147 | 113..415 | 100 | -> | Plus |
| 2R | 15324202..15324341 | 416..555 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:51 Download gff for
UFO01201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11211707..11211846 | 416..555 | 100 | == | Plus |
| arm_2R | 11210980..11211070 | 20..112 | 94 | -> | Plus |
| arm_2R | 11211350..11211652 | 113..415 | 100 | -> | Plus |
