UFO01202.5prime Sequence
1221 bp (1031 high quality bases) assembled on 2008-07-17
> UFO01202.5prime
GTCGACATCCTCGAACATGCGGCCGCCGCAGAAGTCCAAGCTGCTGAAGG
TCGTCATACTGGGCGACGGAGGCGTTGGCAAGTCCGCCCTGCTCACCCGA
TTCGTCGCCAATCGCTACGAGGAGAACAACTTCCACACCATCGGCGTGGA
GTTCATGAACAAGGACATAGTCGTCGACGGGGAGCGCTACACTCTGCAGA
TATGGGACACCGCTGGCCAGGAGCGATTCCGGGCTCTACGCACCCCGTTC
TACAGAGGATCGGACATCTGTCTGCTCTGCTACGCACTCGACGACCGGGA
CAGCTTGAAGGGATTGGGTGTGTGGCGCAATGAGTTCCTCAACTACGCAG
ATGTGGACCAGGACAAGTTTCCATTCATCGTGGTGGGAAATAAGAACGAC
ATTCCGGCGCAGAAGCGACAGGTGAGCTCCGACGCAGTGCAGCAGTGGTG
CGCGGAGCAGAAGGTGGCCTGCCACATCGAGACGTCATCGAAGGCGGCAA
CCAATGTGACGGATGCGTTCGTCCTTGGCCTTCGCCAGTGGCGGCACATG
GAGTGCGTGGCCGAGGCGGAACTGCGCCAGCACGGCGACACCATTGACCT
CACCCGCCCCATTCGCCTGGTGCAGCGGCGCATCTGTTGCACAGGCGGAG
GAGGCGGTGGCGGCGGCGTAGGGCAGGACGCGGATGGCGATGATGCCGCC
ATGCACAGTCCGGGCAAGAAAGTGTTCGGCCAGAAGCGCAACGCCAGCAA
GGCGCCAGCCACCAATTATCGGCTAGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCAT
AATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTC
ACCAATAAAAAACGCCCGGCGGCACCGGAGCGGTTCTTGAACAAATCCAG
ATGGAAGTCTGAGGTCATTACTGGATTTTATCACAGGAGTTCAAGCCGAG
CTCGATATTCAATTACGCCCGCCCTGCCACTTCATCGTGTAGTTGTTTGT
AATTCATAAGCATTCTGGCCAACTGTAGCCATCCAAACGCATGATATGAA
CCCTGAATCGCCCAGCGCATTCGCACTGTCCCTTGCATAAATTGCCATGG
TGAAAACGGGCCAGAATGTCAATTGCCAGGTTAATAACTGTGCAACCTTC
CACGGGAAATTGGCTTGACAC
UFO01202.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab9-RA | 1604 | CG9994-RA | 303..1066 | 12..775 | 3805 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19434921..19435303 | 393..775 | 1900 | 99.7 | Plus |
| 2L | 23513712 | 2L | 19434665..19434861 | 198..394 | 985 | 100 | Plus |
| 2L | 23513712 | 2L | 19432876..19433063 | 12..199 | 940 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:30:53 has no hits.
UFO01202.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:21 Download gff for
UFO01202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab9-RA | 299..1071 | 7..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:20:02 Download gff for
UFO01202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab9-RA | 280..1052 | 7..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:19:49 Download gff for
UFO01202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab9-RA | 299..1071 | 7..781 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:19:49 Download gff for
UFO01202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19432872..19433063 | 7..199 | 98 | -> | Plus |
| 2L | 19434667..19434861 | 200..394 | 100 | -> | Plus |
| 2L | 19434923..19435308 | 395..781 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:21 Download gff for
UFO01202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19432872..19433063 | 7..199 | 98 | -> | Plus |
| arm_2L | 19434667..19434861 | 200..394 | 100 | -> | Plus |
| arm_2L | 19434923..19435308 | 395..781 | 98 | == | Plus |
