UFO01203.5prime Sequence
1213 bp (1047 high quality bases) assembled on 2008-07-17
> UFO01203.5prime
AAATAGCATACATTATACGAAGTTATCAGTCGACATGGCTCGCCGCTATG
ATTCCCGCACCACGATCTTCTCGCCGGAGGGCCGTTTGTACCAGGTGGAG
TACGCCATGGAGGCCATCTCGCACGCCGGAACCTGCCTCGGAATCCTCGC
CGAGGACGGCATCCTGTTGGCAGCCGAGTGCCGCAGCACAAACAAATTGC
TGGACAGCGCCATTCCTTCGGAGAAGATCTATCGCCTGAACGACAACATG
GTCTGCTCGGTGGCTGGCATCACCTCCGATGCCAATGTGCTGACCTCAGA
ACTGCGTCTGATTGCCCAGCGTTACCAGTTCAGCTACGGCGAGGTGATTC
CCTGCGAGCAGCTGGTGTCGCACCTCTGCGACATCAAACAGGCGTACACT
CAGTACGGCGGAAAGCGTCCCTTCGGCGTCTCGCTGCTCTACATGGGATG
GGACAACAAGTACGGCTACCAACTGTACCAGTCGGATCCCAGCGGCAACT
ACGGCGGATGGAAGGCCACCTGTATTGGCAACAACTTCGGTGCCGCGATC
TCCATGCTGAAGCAGGAGCTGGCCGATAAGGAGAACGTGAAGCTGACGCT
GGCGGACGCCAAGGATTTGGCCATCAAGGTACTGAGCATGACCCTGGACA
CCACCAAGCTGACCCCGGAGAAGGTCGAGATGGCCACGCTGCAGCGTGTG
GACAATAAGACCGTATACAGTGTCCTGGAGAAACCCGATGTGGAGAAGCT
GATCGAGAAGTACACAAAGGTACAGGCGGAGGCCGAGGCTGCCAAGAAGG
AGAAGCAAGCGAAGCAGCCGACCAAGGCAAGCTTTCTAGACCATTCGTTT
GGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATATTCATAATCA
TAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCT
CACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAATTCAGAT
GGAGTTCTGAGGTCATTACTGGATCTATCACAAGGAGTCCAAGCGAGCTC
GATATCAAATTACGCCCTGCCGGCCACTCATCGCAGTACTGTTGTTATTC
ATTAGCATTCTGGCCGACTGAAGCAATCAAAACGGCCATGTATGAACCTG
AATCGCAAGCGCATCAGTCCTTGTCGCCTTGGGATATAAATATTGGCCAA
TTGGGAAAACGGA
UFO01203.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosalpha3-RA | 973 | CG9327-RA | 92..883 | 35..826 | 3960 | 100 | Plus |
| Prosalpha3T-RA | 889 | CG1736-RA | 50..526 | 50..529 | 395 | 72.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20995446..20996028 | 244..826 | 2915 | 100 | Plus |
| 2R | 25286936 | 2R | 20995102..20995308 | 37..243 | 1035 | 100 | Plus |
| 3R | 32079331 | 3R | 31122890..31123119 | 529..300 | 370 | 77.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:26:42 has no hits.
UFO01203.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:00 Download gff for
UFO01203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha3-RA | 88..886 | 28..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:15:13 Download gff for
UFO01203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pros29-RA | 86..884 | 28..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:06 Download gff for
UFO01203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha3-RA | 88..886 | 28..830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:06 Download gff for
UFO01203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20995085..20995308 | 17..243 | 95 | -> | Plus |
| 2R | 20995446..20996031 | 244..830 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:00 Download gff for
UFO01203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16882590..16882813 | 17..243 | 95 | -> | Plus |
| arm_2R | 16882951..16883536 | 244..830 | 99 | == | Plus |
