UFO01204.5prime Sequence
1203 bp (1081 high quality bases) assembled on 2008-07-17
> UFO01204.5prime
GATCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAG
TCGACATGTCCTCACGCTACGATCGTGCTGTAACCATATTCTCTCCCGAC
GGTCACCTCCTGCAGGTGGAGTATGCCCAGGAGGCCGTTCGCAAGGGATC
GACTGCGGTCGGAGTTCGCGGCGCCAACTGCGTTGTGCTTGGCGTGGAGA
AGAAGTCGGTGGCCCAACTGCAGGAGGATCGAAAGGTGCGCAAGATTTGC
ATGCTCGACAACCACGTTGTAATGGCTTTTGCCGGTCTCACGGCCGACGC
TCGCATCATGATCAATCGTGCCCAGGTGGAGTGCCAGAGCCATCGTCTCA
ATGTCGAGGATCCCGTGACCCTCGAGTACATAACCAGATTCATTGCCCAG
CTGAAACAAAAATACACGCAGAGCAATGGCCGCCGTCCCTTCGGTATTTC
CTGCCTTATTGGCGGCTTCGATGCCGATGGCTCTGCGCATCTGTTCCAGA
CTGAGCCGTCGGGCATTTTCTACGAGTATAAGGCTAACGCCACCGGGCGA
TCGGCAAAGGTTGTGCGCGAGTTCTTCGAGAAGTCCTACCGCGAGGAGGA
GGTGGCCAACGAGCACGGAGCCGTCAAACTGGCCATCCGTGCGCTGCTCG
AGGTGGCGCAGTCAGGCCAGAACAATCTGGAGGTGGCCATCATGGAGAAC
GGCAAGCCACTGAAAATGCTGGACACCGATGTCATTACCGATTATGTTAA
GATCATCGAGAAGGAGAAGGAGGAGGAGCTCGAGAAGAAGAAACAGAAAA
AGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGT
CATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATC
CTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGC
AACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGTCATTACTGGAT
CTATCAACAGGAGTCCAGCGAGCTCGATATCAAATACGCCCCGCCCTGCC
ACTCATCGCAGTACTGTTGTATCATTAGCATTCTGCGACATGCAGCATCA
AACGGCATGATGACTGATCGCAGCGCATCAGCACCTTGTCGCTGGCTATA
TATTTGGCCATGGTGAACCGGGGCGAAATTTGTCCAATATTGTGCCAAGG
GTT
UFO01204.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosalpha4-RA | 1176 | CG3422-RA | 149..895 | 56..802 | 3735 | 100 | Plus |
| Prosalpha4T1-RA | 891 | CG17268-RA | 57..726 | 56..725 | 1175 | 78.9 | Plus |
| Prosalpha4T2-RB | 1254 | CG4569-RB | 103..581 | 68..546 | 880 | 79.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16276890..16277306 | 386..802 | 2085 | 100 | Plus |
| 3R | 32079331 | 3R | 20748349..20749018 | 725..56 | 1175 | 78.4 | Minus |
| X | 23542271 | X | 16276596..16276826 | 157..387 | 1155 | 100 | Plus |
| X | 23542271 | X | 16276418..16276521 | 56..159 | 520 | 100 | Plus |
| 2R | 25286936 | 2R | 24501794..24501988 | 385..191 | 390 | 80 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:32:18 has no hits.
UFO01204.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:09 Download gff for
UFO01204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha4-RA | 142..898 | 48..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:23:29 Download gff for
UFO01204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pros28.1-RA | 140..896 | 48..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:51 Download gff for
UFO01204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha4-RA | 142..898 | 48..806 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:51 Download gff for
UFO01204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16276411..16276519 | 48..157 | 96 | -> | Plus |
| X | 16276597..16276826 | 158..387 | 100 | -> | Plus |
| X | 16276892..16277309 | 388..806 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:09 Download gff for
UFO01204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16170925..16171342 | 388..806 | 99 | == | Plus |
| arm_X | 16170444..16170552 | 48..157 | 96 | -> | Plus |
| arm_X | 16170630..16170859 | 158..387 | 100 | -> | Plus |
