UFO01205.5prime Sequence
1216 bp (1039 high quality bases) assembled on 2008-07-17
> UFO01205.5prime
GGCCGCATAAAAACGTATAGCATACATTATACGAAGTTATCAGTCGACAT
GGTGCCCATCGGAGCCGTGCACGGCGGCCATCCCGGCGTAGTGCATCCGC
CACAGCAACCACTGCCCACGGCGCCCAGCGGCCCAAACTCGCTGCAGCCG
AACTCGGTGGGCCAGCCGGGGGCCACCACCTCCTCGAACAGCAGCGCCTC
CAACAAGAGCTCGCTATCCGTCAAGCCCAACTACACGCTCAAGTTCACGC
TGGCCGGGCACACCAAGGCGGTGTCGGCGGTCAAGTTCAGTCCGAATGGC
GAGTGGCTGGCCAGCTCCTCCGCTGATAAACTAATCAAAATCTGGGGAGC
ATACGATGGCAAGTTCGAGAAGACCATTTCGGGCCACAAGCTGGGCATCA
GCGATGTGGCCTGGAGCTCAGACTCGCGACTCCTCGTGAGCGGCAGTGAT
GACAAGACGCTCAAGGTCTGGGAGCTGAGCACCGGGAAGAGCTTGAAAAC
TCTGAAGGGCCACAGCAACTATGTGTTCTGCTGCAACTTTAATCCGCAGT
CCAATCTGATCGTCTCCGGCAGCTTCGACGAGAGCGTTCGCATATGGGAT
GTGCGCACCGGCAAGTGTCTGAAGACTCTACCCGCCCATTCCGATCCCGT
TTCGGCGGTACATTTCAATCGCGACGGATCGCTGATCGTGAGCAGCAGCT
ACGACGGCCTCTGTCGCATATGGGACACGGCCAGTGGACAGTGCTTGAAA
ACCCTGATCGACGACGACAATCCGCCCGTCAGCTTTGTAAAGTTCTCGCC
CAATGGCAAGTACATTTTGGCCGCCACGCTGGATAATACGCTCAAGTTGT
GGGACTACTCGAAGGGCAAGTGCCTGAAGACGTATACGGGTCACAAGAAT
GAGAAGTACTGCATATTCGCCAACTTCTCGGTGACGGGGAGGAAGTGATC
GTGAGTGGCAGCGAGGACACATGTCTACATTTGGAATCTGCAGAGCAAGG
AGGTGGTGCAAAAGCTGCAGGACACACCGATACCGTTCTGTGCACCGCCT
GCCATCCCAGGATACATCATTGCTTCCGCGGCGCTCGAGAACGACAGACC
ATCAGCTGTGAGTCGGATCCAGCCAGCTTCTAGACATCGTTGGCGCCGGC
AGTAATGCATATCTATCTAGCTAATCATAATCCACACCTAGCCTAGGAGA
GATTCCGGTGGGCCTT
UFO01205.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wds-RB | 1973 | CG17437-RB | 297..1379 | 46..1118 | 5115 | 98.8 | Plus |
| wds-RA | 1634 | CG17437-RA | 297..1379 | 46..1118 | 5115 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2586761..2587379 | 320..938 | 3095 | 100 | Plus |
| X | 23542271 | X | 2586276..2586549 | 46..319 | 1370 | 100 | Plus |
| X | 23542271 | X | 2587443..2587597 | 947..1096 | 515 | 94.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:25:41 has no hits.
UFO01205.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:23 Download gff for
UFO01205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wds-RA | 295..1382 | 42..1121 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:23:31 Download gff for
UFO01205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wds-RA | 298..1385 | 42..1121 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:00 Download gff for
UFO01205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wds-RA | 295..1382 | 42..1121 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:00 Download gff for
UFO01205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2586276..2586549 | 46..319 | 100 | -> | Plus |
| X | 2586761..2587386 | 320..945 | 99 | -> | Plus |
| X | 2587441..2587626 | 946..1121 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:23 Download gff for
UFO01205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2480309..2480582 | 46..319 | 100 | -> | Plus |
| arm_X | 2480794..2481419 | 320..945 | 99 | -> | Plus |
| arm_X | 2481474..2481659 | 946..1121 | 93 | | Plus |
