UFO01206.5prime Sequence
1231 bp (1065 high quality bases) assembled on 2008-07-17
> UFO01206.5prime
ATCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGT
CGACATGGCAAGCATAGTACTTATAGCTTGCTTGGCTATATTGGGATTAA
TTATTACAATCGCTCTTTTTCTGGCTGGAGGATACTTGTGGTGGAGGCAT
AAAAGATCACAGTTACAGTTTATTGAACCAAATGAAGATGAGGAATCTAG
TAGTTATAGTCTTCGGGCTGCTCAGGATATTGTTGACTCTGGTAATCCAC
CTACAAAACCGCAAGTGCCGGTGGCACATGCTATCACGACTCCTCTCCAA
AATAATATTAACAGGAAATTAAATGGATTTTTAAGTCTTAGAACTCCTTT
GATTGGCGGGTCGGGGGCCTCTCAAACAAAACCGCAAATCATTTCTTCAG
TTGGAAATCCTGGAGATGGGACTACGAAAGATTCTGCAAATAAAAGTATC
TCAATGACAGACATGTATTTGGATAGCACCGATCCAAGTGAAAATGTTGG
GCAAATACATTTCTCCTTGGAGTATGATTTCCAAAACACAACATTAATTT
TGAAAGTTCTTCAAGGAAAAGAGCTTCCAGCAAAAGATTTGAGTGGTACT
TCCGATCCATATGTTCGTGTAACGCTGTTACCAGATAAAAAGCATAGATT
GGAAACCAAAATAAAACGGCGAACCCTTAATCCACGATGGAATGAAACAT
TTTATTTTGAAGGTTTTCCAATTCAAAAACTTCAATCACGTGTTTTACAC
TTACATGTTTTTGATTACGATCGGTTTTCAAGAGATGACTCCATAGGGGA
AGTATTTCTTCCTTTATGTCAGGTTGACTTTGCTGGAAAACAATCTTTTT
GGAAAGGCTTTAAAGCCCCCTGCAAAGGATAAATGCGGAGAACTTCTCTC
CTCCCTTTGCTATCACCCGTCGAACTCAATTTTGACTTTAACACTAATTA
AAGCGAGAAATTTGAAAGCCAAAGATATCAACGGAAAATCTGATCCATAC
GTAAAGGTGGGGCTACAGTTTGGCGATAAAAGTTTGCAAGCTTTCTAGAC
CATTCGTTGGCGCGCGTCCCAGGTAGTGTCATAATCATAATCATAATCAT
ATCATAATCACACCTAGCTAGAGATCTGGTCATGACTATGCCTGAATTCT
CAACAATAAAAGTCGGCGCACGACGATTCTGAAACAATCGAATGGAGTTC
TTTGAAGGTTCTCATATACTAATCACGTGCA
UFO01206.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syt7-RM | 2830 | CG2381-RM | 123..1102 | 52..1032 | 4865 | 99.8 | Plus |
| Syt7-RA | 2794 | CG2381-RA | 88..1066 | 53..1032 | 4860 | 99.8 | Plus |
| Syt7-RB | 2684 | CG2381-RB | 43..1021 | 53..1032 | 4860 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 282434..282738 | 743..439 | 1525 | 100 | Minus |
| 4 | 1348131 | 4 | 305015..305179 | 216..52 | 825 | 100 | Minus |
| 4 | 1348131 | 4 | 281724..281894 | 992..821 | 810 | 99.4 | Minus |
| 4 | 1348131 | 4 | 302386..302527 | 356..215 | 710 | 100 | Minus |
| 4 | 1348131 | 4 | 281946..282028 | 824..742 | 415 | 100 | Minus |
| 4 | 1348131 | 4 | 302242..302324 | 438..356 | 415 | 100 | Minus |
| 4 | 1348131 | 4 | 280498..280538 | 1032..992 | 190 | 97.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:28:12 has no hits.
UFO01206.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:48 Download gff for
UFO01206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt7-RB | 38..1028 | 45..1039 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:19:27 Download gff for
UFO01206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt7-RH | 95..1088 | 43..1039 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:44 Download gff for
UFO01206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt7-RM | 118..1109 | 46..1039 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:44 Download gff for
UFO01206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 282436..282738 | 439..741 | 100 | <- | Minus |
| 4 | 302242..302323 | 357..438 | 100 | <- | Minus |
| 4 | 302386..302526 | 216..356 | 100 | <- | Minus |
| 4 | 305016..305184 | 43..215 | 97 | | Minus |
| 4 | 281724..281892 | 823..992 | 99 | <- | Minus |
| 4 | 281948..282028 | 742..822 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:48 Download gff for
UFO01206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 302350..302518 | 823..992 | 99 | <- | Minus |
| arm_4 | 302574..302654 | 742..822 | 100 | <- | Minus |
| arm_4 | 303062..303364 | 439..741 | 100 | <- | Minus |
| arm_4 | 322868..322949 | 357..438 | 100 | <- | Minus |
| arm_4 | 323012..323152 | 216..356 | 100 | <- | Minus |
| arm_4 | 325642..325810 | 43..215 | 97 | | Minus |
