UFO01207.5prime Sequence
1221 bp (989 high quality bases) assembled on 2008-07-17
> UFO01207.5prime
TAGCATACATTATACGAAGTTATCAGTCGACATGATGGTTGAGTCCGATG
GAACCGCCGACGCCACCCGCCGCCTAAACGTGAAGAAGCAAACACTGGAC
GATGCGTACGCCGTGCCCGCCAACTTCCTGGAGATCGACGTGGTCAATCC
GCTGACCACCATGGCGGCGGGCAAGAAGCGCTACACGGACTACGAGGTCC
GGATGCGGACCAATCTGCCCGTCTTTAAGGTAAAGGAGTCCAGTGTCAGG
CGACGCTACAGCGACTTTGAGTGGCTGCGAAACGAGCTGGAGCGGGATAG
CAAGATTGTGGTGCCACCACTCCCAGGAAAGGCATGGAAGCGGCAGATGC
CCTTCCGCGGCGACGAGGGCATCTTTGACGAAAGCTTCATCGAGGAGCGG
CGCAAGGGACTGGAGGCCTTCATCAACAAGATAGCCGGACATCCGCTGGC
GCAGAACGAGCGCTGCCTGCATATGTTCCTGCAGGAGAATGTCATAGATA
AGAACTACGTGCCCGGCAAGATTCGGAACACAGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCA
TAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTG
GATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAA
TCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAG
CGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGT
TGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATG
ATGAACCTGAATCGCCAGCGGCATCAGCAACCTTGTCGGCCTTGCGTATA
ATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCATATTGGCCCA
CGTTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAA
AAACATATTCTCAATAAACCTTTAGGAAATAAGGCCATGTTTCACCGTAC
ACGCCCATCTGGCAAATATATGTGTAGAACTGCGAAATCGTCTGTATTCA
CTCCAGAGCGATGAAACGTTCGTTTGCTCAATGAAACGGGGTTACAGGTG
ACTATCATATTATCCAGCTCACGTCTTTCATTGTCATTAAGCGAACTATT
ACTCGGGATAGTGAGACACAC
UFO01207.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:17:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snx3-RB | 1860 | CG6359-RB | 314..814 | 32..532 | 2505 | 100 | Plus |
| Snx3-RA | 1426 | CG6359-RA | 314..814 | 32..532 | 2505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:17:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12629220..12629449 | 303..532 | 1150 | 100 | Plus |
| 3R | 32079331 | 3R | 12628344..12628520 | 32..208 | 885 | 100 | Plus |
| 3R | 32079331 | 3R | 12628888..12628984 | 208..304 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:17:31 has no hits.
UFO01207.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:14 Download gff for
UFO01207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snx3-RA | 307..823 | 24..543 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:27:35 Download gff for
UFO01207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6359-RA | 297..813 | 24..543 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:22 Download gff for
UFO01207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snx3-RA | 307..823 | 24..543 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:22 Download gff for
UFO01207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12628337..12628520 | 24..208 | 97 | -> | Plus |
| 3R | 12628889..12628984 | 209..304 | 100 | -> | Plus |
| 3R | 12629222..12629449 | 305..532 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:14 Download gff for
UFO01207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8454059..8454242 | 24..208 | 97 | -> | Plus |
| arm_3R | 8454611..8454706 | 209..304 | 100 | -> | Plus |
| arm_3R | 8454944..8455171 | 305..532 | 100 | == | Plus |
