UFO01210.5prime Sequence
1200 bp (1004 high quality bases) assembled on 2008-07-17
> UFO01210.5prime
TAACAACGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCTGAT
GATCCAGAAAACTCAGTGGATAGGCCCACAGACGACGGAGATGCCGGCAA
ACCGGAAAAAATGTTTACGCTGAAGAAATGGAACGCAGTTGCAATGTGGA
GTTGGGATGTGGAATGCGATATCTGTGCCATTTGCCGTGTTCAAGTTATG
GATTCCTGCCTTCGCTGCCAGGCGGACAACAAGCGGGATGTGATGGGTCG
CCAGGACTGCGTGGTGGTTTGGGGCGAGTGCAACCACTCCTTTCACCACT
GCTGCATGTCGCTGTGGGTCAAGCAGAACAACCGATGCCCGTTGTGCCAG
CAGGAGTGGTCCATTCAGCGCATGGGAAAAGCAAGCTTTCTAGACCATTC
GTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATA
ATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGA
TTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATC
CAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCG
AGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTG
TAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGAT
GAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATAT
TTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTT
TAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACA
TATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACAC
GCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGTAT
TCACTCAAAGCGATGAAAACGTTTCAGTTTGCTCATGAAAACGTGTACAG
GGTGAACCTGTGATATCACAGCTCACGTCTTTCATTGCATACGAATTCGA
TGACATTCATCAAGCGGCAAAATGTAATAAGCGATAAACTTGTGCTAATT
TTTCTTTACGTCTTTAAAAGCGTATATATCAGCTGACGGTTGGTTTAAGG
TACTTGGACACTGACACTGAATGTGCCTACAAATGTGTTCTTTTCGCAGA
UFO01210.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Roc2-RB | 758 | CG8998-RB | 268..609 | 39..380 | 1710 | 100 | Plus |
| Roc2-RA | 584 | CG8998-RA | 172..513 | 39..380 | 1710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11652905..11653084 | 380..201 | 900 | 100 | Minus |
| 2R | 25286936 | 2R | 11678206..11678368 | 201..39 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:23:46 has no hits.
UFO01210.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:08 Download gff for
UFO01210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc2-RA | 172..516 | 39..384 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:15:03 Download gff for
UFO01210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc2-RA | 170..514 | 39..384 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:30 Download gff for
UFO01210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc2-RA | 172..516 | 39..384 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:30 Download gff for
UFO01210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11652905..11653083 | 202..380 | 100 | <- | Minus |
| 2R | 11678206..11678368 | 39..201 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:08 Download gff for
UFO01210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7540410..7540588 | 202..380 | 100 | <- | Minus |
| arm_2R | 7565711..7565873 | 39..201 | 100 | | Minus |
