UFO01212.5prime Sequence
1220 bp (1005 high quality bases) assembled on 2008-07-17
> UFO01212.5prime
GGCCGCATAACAACGTATAGCATACATTATACGAAGTTATCAGTCGACAT
GGAGCAAATGGAAGTGGACGTTGACATGTCGGCCAAGCCCAGCACATCGT
CCTCCGCCGCCGCCGGGAGCAGTATGGCAGTGGATAAGACTGCGGATCAA
AACCCACAGCCGCAGGGAAACATAATGGCTGCAGCGGGCACCAGTGGTTC
TGTGACCATATCGCTGCATCCGCTGGTCATAATGAACATCTCCGAGCACT
GGACACGCTTTCGTGCACAGCACGGTGAGCCGCGACAGGTGTACGGAGCA
CTGATTGGCAAGCAGAAGGGCCGCAACATTGAGATTATGAACTCGTTCGA
ACTGAAGACGGACGTTATTGGCGATGAAACAGTGATCAACAAGGACTACT
ACAACAAGAAGGAACAACAAGACAAGCAGGTGTTCAGTGATCTCGACTTC
ATAGGCTGGTACACAACCGGCGACAATCCCACTGCCGATGACATTAAGAT
CCAAAGACAGATAGCCGCCATCAACGAGTGCCCCATCATGCTACAGCTGA
ATCCGCTCTCCCGCAGCGTCGACCACCTTCCCCTGAAGCTATTCGAGTCC
CTAATCGATCTGGTGGACGGCGAGGCCACCATGCTGTTCGTGCCCCTCAC
CTACACACTGGCCACCGAGGAGGCGGAGCGCATTGGTGTGGATCATGTGG
CGCGCATGACCTCGAACGAGTCCGGCGAGAAGAGCGTGGTGGCGGAGCAT
TTGGTGGCCCAGGACAGTGCCATTAAGATGCTAAATACACGCATCAAGAT
CGTGCTGCAGTACATACGCGATGTGGAGGCCGGAAAGCTGCGGGCCAACC
AAGAGATTCTGCGAGAAGCCTACGCTCTCTGCCACCGACTGCCCGTCATG
CAGGTGCCCGCCTTCCAGGAGGATTCTACACGCAGTGCAACGATGTGGAC
TGATTAGCTACCTGGGCACCGCTGTGCGGGCTGCAATGATATGCACCACT
TTGTGAACAGTTTAATATGCTGTACGACCGCCAGGGATCCGCGGCGCCCG
CATGCAGTCTCCTACTATGCAGCTTTCTAGAACATTCGGTGGCCGGCGGC
CCAGGTAGTGTCATAATCCTATCATAATCATATCTAATCCAAACTAGCTA
GGAATTCTGCCATAGACTAGGCTGGATTCCCACACAATAACATGCTCGGG
CGGCCAACTCGAAGGGCGGC
UFO01212.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CSN6-RA | 1203 | CG6932-RA | 122..1131 | 48..1055 | 4815 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22581331..22581951 | 427..1043 | 2815 | 98.7 | Plus |
| 3R | 32079331 | 3R | 22580894..22581278 | 48..432 | 1895 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:56:08 has no hits.
UFO01212.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:44 Download gff for
UFO01212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN6-RA | 122..1145 | 48..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:24:27 Download gff for
UFO01212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN6-RA | 120..1143 | 48..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:44:41 Download gff for
UFO01212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN6-RA | 122..1145 | 48..1068 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:44:41 Download gff for
UFO01212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22580894..22581275 | 48..429 | 99 | -> | Plus |
| 3R | 22581334..22581951 | 430..1043 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:44 Download gff for
UFO01212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18406616..18406997 | 48..429 | 99 | -> | Plus |
| arm_3R | 18407056..18407673 | 430..1043 | 98 | == | Plus |
