UFO01213.5prime Sequence
1205 bp (1045 high quality bases) assembled on 2008-07-17
> UFO01213.5prime
GGCCGCATAACAACGTATAGCATACATTATACGAAGTTATCAGTCGACAT
GTCGCATCTCCGGGGTTTGGGGCGACTGCTGATCGCCGTGACCTTCTTCA
CATGCGGATTCTTCGTCAACATTGGCCAGCTCCTGCTGATTCTCCTCGTG
AGGCCCTTCGATAAGAAGCTATCCCGCAGTCTGGCCTACTACCTGCACTA
CTCCTTCTATTGCATCCTTGTCTGTGTGGCGGAATGGTATGCGGGCAGCA
AGCTGAGGGTGTACATCGATCCCCAGGACGAGCAGAAGTTCTTCGGCAAG
GAGCATGGACTGCTCCTGATGAACCACACGTACGAGATCGACTGGCTGAC
CGCCTGGATGATCACCGACAAGCTGGGCAATCTGGGAGGCACCAAGGCGT
ATGCCAAGAAGATGCTGCGCTATGTTCCGGTCCTGGGATGGGTCTGGTGG
ATGGCCGAGTTCATCTTCCTTGACCGCAACTTCGAGAAGGACAAGGTGGT
GATCAAGACGCAGCTGAAGGAGGTCTTCTCCTATCCGGATCCCGTGTGGC
TACTGCTGAACGCGGAGGGCACCCGTTTCACACCCGCCAAACACGAGCTG
TCAGTCAAGTTCGCCGAGGAGCGAGGTCTTCCCCTCCTCAAGCACCATCT
GATTCCGCGCACTAAGGGATTCACGACCAGTCTGCCCACCATGCGTGGCA
TCTGTCCTGCCATCTACGACATCAATCTGGCCTTCAAGAAGAATGCCGAG
CCAAAGCCCACCATGCTGTCCCAGTTGAACGGAGAGCCCGTGGAACCGTA
CATGTACATTCGCCGAGTGCCACTGGACGTGGTTCCCGATGACGAGAAGG
AGGCCGCCGCCTGTATGCAGGACTTCTTTGCGGAAAAGGACAAGATCATC
GACAGCTTCCACGAGACCGGGCAGCTTCTTTAAGAATTTCCGGAGTCAAG
GAGGTGCCCGAGAAAATCTACAAGCCGCGCCTGAGCACGCTCCTCACTTC
TTGGGCTGGGCCACCTTGCCGTCTGTGCATCTGCACTACTGGTCACCTCG
CTGCTGCCAGCACTGGTTTGGCTCATCACGGTCTTTCATTTGGGAGATTC
TATAAGCCTCATGGAATACGCTGTGATGCTCGAAGATCAGACAAGCTCTG
CATGGAACACTGCCTGCAGAAAGCCAGCTTTCTGAACCTCGTTTTGTCCC
CGCCG
UFO01213.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:09:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4753-RC | 1575 | CG4753-RC | 280..1394 | 49..1151 | 5065 | 97.9 | Plus |
| CG4753-RA | 1355 | CG4753-RA | 60..1174 | 49..1151 | 5065 | 97.9 | Plus |
| CG4753-RB | 1570 | CG4753-RB | 275..1389 | 49..1151 | 5065 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:09:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16379700..16380235 | 750..215 | 2680 | 100 | Minus |
| 3L | 28110227 | 3L | 16379362..16379629 | 1017..749 | 1185 | 98.5 | Minus |
| 3L | 28110227 | 3L | 16380471..16380636 | 214..49 | 830 | 100 | Minus |
| 3L | 28110227 | 3L | 16383353..16383787 | 728..294 | 540 | 74.9 | Minus |
| 3L | 28110227 | 3L | 16382556..16382670 | 935..820 | 260 | 83.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:09:27 has no hits.
UFO01213.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:33 Download gff for
UFO01213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4753-RB | 271..1389 | 41..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:20:03 Download gff for
UFO01213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4753-RA | 55..1169 | 49..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:34 Download gff for
UFO01213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4753-RB | 271..1389 | 41..1151 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:34 Download gff for
UFO01213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16379270..16379627 | 751..1098 | 95 | <- | Minus |
| 3L | 16379700..16380235 | 215..750 | 100 | <- | Minus |
| 3L | 16380471..16380636 | 49..214 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:33 Download gff for
UFO01213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16372370..16372727 | 751..1098 | 95 | <- | Minus |
| arm_3L | 16372800..16373335 | 215..750 | 100 | <- | Minus |
| arm_3L | 16373571..16373736 | 49..214 | 100 | | Minus |
