UFO01214.5prime Sequence
1198 bp (1016 high quality bases) assembled on 2008-07-17
> UFO01214.5prime
ATAACAACGTATAGCATACATTATACGAAGTTATCAGTCGACATGGGTTT
GTGCAAGTGCCCCAAGCGCCTGGTGACCAACCAGTTTTGCTTTGAGCATC
GAGTCAATGTTTGCGAACACTGTATGGTTCAGTCTCATCCAAAGTGCATT
GTGCAGTCGTATCTGCAGTGGCTGCGGGACAGCGACTACATCTCCAACTG
CACTCTGTGCGGCACCACATTGGAGCAGGGCGATTGCGTGCGCCTCGTCT
GCTACCATGTTTTCCACTGGGACTGCCTGAACGCCCGCCAAGCCGCACTG
CCTGCCAACACAGCCCCTCGGGGTCACCAGTGCCCCGCCTGCAGTGTGGA
GATCTTTCCCAACGCCAACCTGGTCTCCCCGGTGGCCGATGCTCTGAAGA
GTTTCCTGTCGCAGGTTAACTGGGGCAGAAATGGCCTGGGACTCGCCCTG
CTCTCTGAGGAGCAGAGCAGCAGTCTGAAGGCCATTAAGCCCAAGGTGGC
AAGCCAGGCGGCTGTCAGCAACATGACCAAAGTGCACCACATCCATTCCG
GTGGCGAGCGAGAGCGCACGAAGCCCAATGGCCATGACGCCGTGAGCCCA
CATTCCGTGCTCCTAATGGATGCATTTAATCCCCCAAGTGCGGGCGACTA
CGCCAGCAGCAGAAGACCGCTGCTGCCCCGTCAGTCGCCAATTGGTGGGA
CAGATCGAGACGATAATAAGTACCAGCGCCGCACTCCTGCGGAATTGTTC
TCGCGATGGACACGCCGCTTCTATGCGCCCTCCTCGCGGCCGCCGTGGCG
TCGCACTTGGTTCCTGGTGACCGCCGGCATTTTGGCCTTTGTCTTGTTCG
TCTATCTTATGGCCTGGCTGGGTCGCGGAGGATCTGATGCCGTGGACGAG
GGCTGGAATACCCCAATCCACAGCCGAACCACTACGAAGCAAGCTTTCTA
GACCATTCGTTTGGCGCCGCGGGCCCAGGTAGTGTCATAATCATAATCAT
AATCATAATCATAATCACACTAGCTAGAGATCTGTCATGACTAGTGCTGG
ATCTACATAAAACGGCCGGCGGCAACCGACCGTCTGAACAATCAGAATGA
GTCTGGAGGTCATAACTGATCTATCACAGGATCAAGCAACGAATCAATAC
GCTGCCGGCACTCACTGCAAAACGTGTTGTTAATTCTATTAAAGCAAT
UFO01214.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5382-RB | 1165 | CG5382-RB | 171..1067 | 43..938 | 4460 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22364671..22364958 | 938..652 | 1390 | 99.7 | Minus |
3R | 32079331 | 3R | 22365019..22365225 | 652..446 | 1020 | 99.5 | Minus |
3R | 32079331 | 3R | 22365276..22365469 | 450..257 | 970 | 100 | Minus |
3R | 32079331 | 3R | 22365537..22365650 | 256..143 | 570 | 100 | Minus |
3R | 32079331 | 3R | 22365712..22365813 | 144..43 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:04:03 has no hits.
UFO01214.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:01:06 Download gff for
UFO01214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5382-RB | 162..1067 | 31..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:23:35 Download gff for
UFO01214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5382-RB | 160..1065 | 31..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:13 Download gff for
UFO01214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5382-RB | 162..1067 | 31..938 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:13 Download gff for
UFO01214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22364671..22364957 | 653..938 | 99 | <- | Minus |
3R | 22365019..22365220 | 451..652 | 100 | <- | Minus |
3R | 22365276..22365469 | 257..450 | 100 | <- | Minus |
3R | 22365537..22365648 | 145..256 | 100 | <- | Minus |
3R | 22365712..22365821 | 31..144 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:01:06 Download gff for
UFO01214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18190393..18190679 | 653..938 | 99 | <- | Minus |
arm_3R | 18190741..18190942 | 451..652 | 100 | <- | Minus |
arm_3R | 18190998..18191191 | 257..450 | 100 | <- | Minus |
arm_3R | 18191259..18191370 | 145..256 | 100 | <- | Minus |
arm_3R | 18191434..18191543 | 31..144 | 95 | | Minus |