Clone UFO01214 Report

Search the DGRC for UFO01214

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:12
Well:14
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG5382-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO01214.5prime Sequence

1198 bp (1016 high quality bases) assembled on 2008-07-17

> UFO01214.5prime
ATAACAACGTATAGCATACATTATACGAAGTTATCAGTCGACATGGGTTT
GTGCAAGTGCCCCAAGCGCCTGGTGACCAACCAGTTTTGCTTTGAGCATC
GAGTCAATGTTTGCGAACACTGTATGGTTCAGTCTCATCCAAAGTGCATT
GTGCAGTCGTATCTGCAGTGGCTGCGGGACAGCGACTACATCTCCAACTG
CACTCTGTGCGGCACCACATTGGAGCAGGGCGATTGCGTGCGCCTCGTCT
GCTACCATGTTTTCCACTGGGACTGCCTGAACGCCCGCCAAGCCGCACTG
CCTGCCAACACAGCCCCTCGGGGTCACCAGTGCCCCGCCTGCAGTGTGGA
GATCTTTCCCAACGCCAACCTGGTCTCCCCGGTGGCCGATGCTCTGAAGA
GTTTCCTGTCGCAGGTTAACTGGGGCAGAAATGGCCTGGGACTCGCCCTG
CTCTCTGAGGAGCAGAGCAGCAGTCTGAAGGCCATTAAGCCCAAGGTGGC
AAGCCAGGCGGCTGTCAGCAACATGACCAAAGTGCACCACATCCATTCCG
GTGGCGAGCGAGAGCGCACGAAGCCCAATGGCCATGACGCCGTGAGCCCA
CATTCCGTGCTCCTAATGGATGCATTTAATCCCCCAAGTGCGGGCGACTA
CGCCAGCAGCAGAAGACCGCTGCTGCCCCGTCAGTCGCCAATTGGTGGGA
CAGATCGAGACGATAATAAGTACCAGCGCCGCACTCCTGCGGAATTGTTC
TCGCGATGGACACGCCGCTTCTATGCGCCCTCCTCGCGGCCGCCGTGGCG
TCGCACTTGGTTCCTGGTGACCGCCGGCATTTTGGCCTTTGTCTTGTTCG
TCTATCTTATGGCCTGGCTGGGTCGCGGAGGATCTGATGCCGTGGACGAG
GGCTGGAATACCCCAATCCACAGCCGAACCACTACGAAGCAAGCTTTCTA
GACCATTCGTTTGGCGCCGCGGGCCCAGGTAGTGTCATAATCATAATCAT
AATCATAATCATAATCACACTAGCTAGAGATCTGTCATGACTAGTGCTGG
ATCTACATAAAACGGCCGGCGGCAACCGACCGTCTGAACAATCAGAATGA
GTCTGGAGGTCATAACTGATCTATCACAGGATCAAGCAACGAATCAATAC
GCTGCCGGCACTCACTGCAAAACGTGTTGTTAATTCTATTAAAGCAAT

UFO01214.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG5382-RB 1165 CG5382-RB 171..1067 43..938 4460 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22364671..22364958 938..652 1390 99.7 Minus
3R 32079331 3R 22365019..22365225 652..446 1020 99.5 Minus
3R 32079331 3R 22365276..22365469 450..257 970 100 Minus
3R 32079331 3R 22365537..22365650 256..143 570 100 Minus
3R 32079331 3R 22365712..22365813 144..43 510 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:04:03 has no hits.

UFO01214.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:01:06 Download gff for UFO01214.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5382-RB 162..1067 31..938 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:23:35 Download gff for UFO01214.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5382-RB 160..1065 31..938 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:13 Download gff for UFO01214.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5382-RB 162..1067 31..938 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:13 Download gff for UFO01214.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22364671..22364957 653..938 99 <- Minus
3R 22365019..22365220 451..652 100 <- Minus
3R 22365276..22365469 257..450 100 <- Minus
3R 22365537..22365648 145..256 100 <- Minus
3R 22365712..22365821 31..144 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:01:06 Download gff for UFO01214.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18190393..18190679 653..938 99 <- Minus
arm_3R 18190741..18190942 451..652 100 <- Minus
arm_3R 18190998..18191191 257..450 100 <- Minus
arm_3R 18191259..18191370 145..256 100 <- Minus
arm_3R 18191434..18191543 31..144 95   Minus