UFO01216.5prime Sequence
1199 bp (1055 high quality bases) assembled on 2008-07-17
> UFO01216.5prime
CTGCGGCCGCATAACTACGTATAGCATACATTATACGAAGTTATCAGTCG
ACATGGAGTACCTCTACAACGCTAGTATGCATTGCGAAGATGAAGAACGC
GTCAATTTCTACAACATGGACAAGTTCTTCGTGCCCCACGTGCAGTCGAT
TGAGCTGGAGCAGCAGGCGATCCTGCGGCAATACGTGCCCCAGTACGCTT
ATCAGTGGCCCTGGGGATTTGCCCCTTCCGCTTACAGTTATTACCAGGGA
TTCGGTAGCCTTAATATGATGACTATGGACATTACCAAAACCGAACCCGG
TCTCGTCGGGCTTTCCTCCAACCAACAGCAGCAGCAGCAGCAGCAGTCGC
AGCAAAGCAACGCCGGCATGAACAGCGGTGGCCAGAACAACGGGCCCAAT
CCCAATGGCAATGGGAACGTGGTCAATGTGGTCAACTCCGGCGGTGCCGG
TGGCGGCAACAATGGCAACGGGAATGTCCAGAGCATCGCCGCCGCTGCCA
ACAATAATAACAATAACAACAACAACGGCAGCCAATTGTGCGCCGGCTGC
GGCAAGCACATCCAGGACCGCTATCTCCTCCGCGCCCTGGACATGCTGTG
GCACGAGGACTGCCTCAAGTGCGGCTGCTGCGACTGCCGCCTGGGCGAGG
TGGGCTCCACGCTCTACACCAAGGGCAACCTGATGCTCTGCAAGCGGGAC
TACTTGAGATTGTTTGGCAACACGGGCTACTGCGCCGCCTGCAGCAAGGT
GATCCCAGCCTTCGAGATGGTGATGCGTGCAAGGACCAATGTCTATCACT
TGGAGTGCTTCGCTTGTCAGCAGTGTAACCACAGATTCTGTGTGGGCGAC
CGTTTCTACCTGTGCGAGAACAAGATACTCTGCGAGTACGACTATGAGGA
GCGCCTGGTCTTCGCATCGATGGCCAATCATCCGATGCTCAGCGACACGT
CTCCTCCTTGGGCCAGGGCTCACCGACGGGAGCGGCTGGGGCGCAGAATA
CCGCTGGTGATTGCTGGGCGGCGACCCGGTGGCGGCAATGTGATGGCGTG
GGCATGATCACGGACCGCCGCCACCCCCTGCGATCACAATAACCACCACA
TGACCCACAGAACCTGACCGGGCGGGGGCTCACGCTGCATGCTGCTGCTG
CGCACGCGCTGCCAATTGAGAATCACACCTGGGGGGGTCCAGGGCTAGA
UFO01216.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bx-RB | 2051 | CG44425-RB | 102..1190 | 48..1133 | 5070 | 98.3 | Plus |
| Bx-RD | 2494 | CG44425-RD | 761..1633 | 264..1133 | 4005 | 97.9 | Plus |
| Bx-RC | 3413 | CG44425-RC | 597..1469 | 264..1133 | 4005 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18566696..18567138 | 266..708 | 2215 | 100 | Plus |
| X | 23542271 | X | 18566407..18566624 | 48..265 | 1075 | 99.5 | Plus |
| X | 23542271 | X | 18570561..18570832 | 832..1100 | 965 | 95.3 | Plus |
| X | 23542271 | X | 18567509..18567636 | 707..834 | 640 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:31:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 2731..2802 | 464..535 | 125 | 67.1 | Plus |
| Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 3132..3208 | 449..528 | 122 | 65 | Plus |
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2627..2663 | 495..531 | 122 | 81.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2430 | 433..526 | 112 | 59.6 | Plus |
UFO01216.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:03 Download gff for
UFO01216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bx-RB | 100..1222 | 45..1163 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:27:36 Download gff for
UFO01216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bx-RB | 69..1191 | 45..1163 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:07 Download gff for
UFO01216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bx-RB | 100..1222 | 45..1163 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:07 Download gff for
UFO01216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18566405..18566624 | 45..265 | 99 | -> | Plus |
| X | 18566696..18567138 | 266..708 | 100 | -> | Plus |
| X | 18567511..18567636 | 709..834 | 100 | -> | Plus |
| X | 18570564..18570897 | 835..1163 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:03 Download gff for
UFO01216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18460438..18460657 | 45..265 | 99 | -> | Plus |
| arm_X | 18460729..18461171 | 266..708 | 100 | -> | Plus |
| arm_X | 18461544..18461669 | 709..834 | 100 | -> | Plus |
| arm_X | 18464597..18464930 | 835..1163 | 92 | | Plus |
