UFO01217.5prime Sequence
1185 bp (1043 high quality bases) assembled on 2008-07-17
> UFO01217.5prime
ATCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGT
CGACATGTCTTCAACCCCAGCAGCGGGCAGTGCCGCCGAGGTGGCCACCT
CCAGTGCCACCTCAAATGCGCCCAGTGCACCCAGCACAACGGCCAGCAAC
GTGAGCAATACCAGCCAGCCGACGACTGCCGGAACTCCGCAGGCACGTGG
CGGCAGGGGCAGCAACGCCAACGGTGGTGCCTCCGGGAGCAATGCCGGTG
GCGGAGATGAGCCGCGAAAGGAAGCCAAAACAACGCCCAGGATATCCAGG
GCGCTGGGCACCTCGGCCAAGCGCATACAGAAGGAGCTGGCTGAGATCAC
ACTGGATCCACCGCCCAACTGCAGTGCCGGGCCCAAGGGCGACAACCTGT
ACGAGTGGGTATCCACCATACTGGGACCACCCGGATCCGTCTACGAGGGC
GGCGTCTTCTTCCTCGACATACACTTCTCGCCGGAGTATCCCTTCAAGCC
ACCCAAAGTCACGTTCCGCACGCGCATCTATCACTGCAACATCAACAGCC
AGGGCGTCATTTGCCTGGACATACTCAAGGACAACTGGTCGCCGGCGCTG
ACCATATCAAAGGTCTTGCTGTCAATTTGCTCCCTGCTCACAGACTGTAA
TCCAGCCGATCCGCTGGTGGGCAGCATTGCCACGCAATATTTGCAGAATC
GTGAGGAGCACGATCGAATTGCGCGTCTCTGGACAAAAAGGTACGCAACA
GCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCA
TAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCT
GGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAA
CCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATC
TATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCCGCCCTG
CCACTCATCGCAGTACTGTTGTAGTCATTAGCATTCTGCGACATGCAGCC
ATCACAAACGCATGATGACTGATCGCAGCGCATCAGCACCTGGTCGCTGG
TATAATATTGCAATGTGAACGGGGCGAGAGTTGCATTGCCAGTATTCAAC
CTGGTACTCACCCAGGATGCTGAACGAAAACTCAT
UFO01217.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ubc2-RD | 1625 | CG6720-RD | 372..1067 | 55..750 | 3465 | 99.9 | Plus |
| Ubc2-RC | 2111 | CG6720-RC | 305..1000 | 55..750 | 3465 | 99.9 | Plus |
| Ubc2-RB | 1349 | CG6720-RB | 96..791 | 55..750 | 3465 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10766391..10766991 | 655..55 | 2990 | 99.8 | Minus |
| 2L | 23513712 | 2L | 1334347..1334718 | 328..699 | 495 | 75.5 | Plus |
| 2L | 23513712 | 2L | 10766189..10766278 | 742..653 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:44:57 has no hits.
UFO01217.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:31 Download gff for
UFO01217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UbcD2-RA | 305..1006 | 55..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:27:00 Download gff for
UFO01217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UbcD2-RB | 96..797 | 55..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:43 Download gff for
UFO01217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubc2-RB | 96..797 | 55..756 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:43 Download gff for
UFO01217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10766189..10766275 | 656..742 | 100 | <- | Minus |
| 2L | 10766391..10766991 | 55..655 | 99 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:31 Download gff for
UFO01217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10766189..10766275 | 656..742 | 100 | <- | Minus |
| arm_2L | 10766391..10766991 | 55..655 | 99 | == | Minus |
