UFO01220.5prime Sequence
1201 bp (1049 high quality bases) assembled on 2008-07-17
> UFO01220.5prime
TCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTC
GACATGGAGCCTTATGATGTCGTCGTCAACCAGCCCGTCGTCATAGATAA
CGGCTCCGGTGTGATCAAAGCCGGCTTTGCTGGTGAGCACATTCCAAAAT
GCAGGTTTCCCAATTACATTGGCCGGCCCAAGCATGTCCGAGTGATGGCT
GGTGCGCTGGAGGGCGACATATTCGTTGGACCCAAGGCGGAGGAGCACCG
TGGCCTGCTTAGCATCCGGTACCCCATGGAGCACGGCATTGTCACCGACT
GGAATGACATGGAGCGGATATGGAGCTACATTTACAGCAAAGAACAACTG
GCCACCTTCACGGAGGATCATCCCGTGCTGCTGACCGAGGCCCCGCTTAA
TCCGCGCCGAAACCGCGAAAAGGCAGCCGAGTTCTTCTTTGAAGGCATCA
ATGCACCTGCGCTCTTTGTGTCCATGCAGGCGGTGCTCAGTCTCTACGCC
ACCGGTCGTGTGACTGGCGTAGTGCTCGACTCCGGCGACGGTGTGACGCA
TGCGGTTCCTATCTACGAGGGATTCGCCATGCCTCACAGTATTATGCGCG
TGGACATCGCCGGGCGCGATGTGACGCGCTACCTGAAGACACTCATCCGC
CGGGAGGGCTTTAACTTCCGGTCGACTGCCGAATTTGAGATTGTGCGCTC
CATCAAGGAGAAGGTCTGCTATCTGGCCACCAATCCGCAGAAGGAGGAGA
CCGTGGAAACCGAGAAGTTTGCCTACAAGCTGCCCGACGGCAAGATCTTT
GAGATTGGACCTGCACGCTTCAGGGCGCCGGAGGTGCTCTTCCGGCCCGA
TCTGCTGGGCGAGGAATGTGAGGGCATTCACGACGTTCTGATGTACTCCA
TCGAGAAGTCAGATATGGATCTCAGGAAAATGCTCTACCAGACATCGTGC
TGTCCGGCGGATCAACGCTCTTCAAAGGATTCGGCGACGTCTGTGTCCGA
CTGAAGAAAACACTCGGCTATGATCTCAGATCAGGATCGCTGCGCCGCAG
ACGTCAGTACTCCACATGGATGGGCGGATCGATTTAGCCTCGCTCGATAC
TTTCAGAGATGTGATCTCGGACCGGATACGAGGAGGAGGACGAAGCTGCA
GAAGACTTTGCAGCTTCTAGACAGTCGGTTGGGCGGCGCGGGCCAGTAAG
T
UFO01220.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp1-RA | 1469 | CG6174-RA | 80..1178 | 54..1139 | 5085 | 98.3 | Plus |
| CG31347-RA | 865 | CG31347-RA | 728..776 | 102..54 | 245 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12693215..12693710 | 494..988 | 2430 | 99.8 | Plus |
| 3R | 32079331 | 3R | 12692770..12692945 | 167..342 | 880 | 100 | Plus |
| 3R | 32079331 | 3R | 12693004..12693155 | 342..493 | 760 | 100 | Plus |
| 3R | 32079331 | 3R | 12692643..12692707 | 102..166 | 325 | 100 | Plus |
| 3R | 32079331 | 3R | 12691822..12691870 | 54..102 | 245 | 100 | Plus |
| 3R | 32079331 | 3R | 12693829..12693902 | 1035..1105 | 240 | 94.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:31:15 has no hits.
UFO01220.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:35 Download gff for
UFO01220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp1-RA | 74..1185 | 46..1144 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:24:29 Download gff for
UFO01220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp87C-RA | 81..1192 | 46..1144 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:01 Download gff for
UFO01220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp1-RA | 74..1185 | 46..1144 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:01 Download gff for
UFO01220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12692770..12692944 | 167..341 | 100 | -> | Plus |
| 3R | 12693004..12693155 | 342..493 | 100 | -> | Plus |
| 3R | 12691816..12691869 | 46..101 | 92 | -> | Plus |
| 3R | 12692643..12692707 | 102..166 | 100 | -> | Plus |
| 3R | 12693215..12693761 | 494..1035 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:35 Download gff for
UFO01220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8517538..8517591 | 46..101 | 92 | -> | Plus |
| arm_3R | 8518365..8518429 | 102..166 | 100 | -> | Plus |
| arm_3R | 8518492..8518666 | 167..341 | 100 | -> | Plus |
| arm_3R | 8518726..8518877 | 342..493 | 100 | -> | Plus |
| arm_3R | 8518937..8519483 | 494..1035 | 98 | -> | Plus |
