UFO01221.5prime Sequence
1195 bp (1025 high quality bases) assembled on 2008-07-17
> UFO01221.5prime
TCTGCGGCCGCATAACAACGTATAGCATACATTATACGAAGTTATCAGTC
GACATGCCCGAATATGTGCCGGCACGGGGCTTCAAGGAGATGGAAAATCT
GATCAAGCTGTACGAGAACCAGCGCAGCCCCATCTACATCTACTTCTACG
GCGAGAAAGACAAGGACGGACGCAGCTGGTGTCCGGACTGCGTGGCGGCC
GAGGAAACTATCATGAGTGCCTTTCGCAACCACGCGCCGGCGGATTGCAT
GATCCTGGTGGTGGACGTGGGTAGCCGGGAATCCTGGATAGGCAAGGACA
ACATGTTCCGAAAGCCGCCATACTCGGTGGAAGGCATACCGACCCTTATA
CGCTGGAAGGGCGTGGAGCGCCTGGATGGGGATCAGCTGCTCAAGTCGAG
TCTTCTGGAGCTCTTTTTCGAGGAGACCGATCCGAAGAAGTCCAATTTTG
TCGCCCAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTA
AGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAG
GAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCC
GGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATT
ACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCC
CGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG
ACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCAT
CAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGG
CGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTC
CACCCAGGGATTGGCTGAGACGAAAAACATATTCTCATAAACCCTTTAGG
AAATAGCCAGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTA
GAACTGCCGGAAATCGTCGTGTATTCACTTGGTGCGATGAAACGTTTCAG
TTGCTCATGAAAACGGTGTAACAGGGTGAACACTATCCCATATCACAGCT
CACCGTCTTTCATGCCATACGAATTCGATGACATCATCAGGCGGCAATGA
TTAGGCGATAAACTTGGCTATTTTCTTACGGTCTTAAAAAGGGCC
UFO01221.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3939-RB | 747 | CG3939-RB | 313..717 | 54..458 | 2025 | 100 | Plus |
| CG3939-RA | 931 | CG3939-RA | 497..901 | 54..458 | 2025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3175933..3176193 | 198..458 | 1305 | 100 | Plus |
| X | 23542271 | X | 3175514..3175658 | 54..198 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:12:23 has no hits.
UFO01221.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:12 Download gff for
UFO01221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3939-RA | 497..904 | 54..462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:15:09 Download gff for
UFO01221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3939-RA | 396..803 | 54..462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:53 Download gff for
UFO01221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3939-RA | 497..904 | 54..462 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:53 Download gff for
UFO01221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3175514..3175658 | 54..198 | 100 | -> | Plus |
| X | 3175934..3176193 | 199..458 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:12 Download gff for
UFO01221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3069547..3069691 | 54..198 | 100 | -> | Plus |
| arm_X | 3069967..3070226 | 199..458 | 100 | == | Plus |
