UFO01222.5prime Sequence
1223 bp (1026 high quality bases) assembled on 2008-07-17
> UFO01222.5prime
ATCTGCGGCCGCATAACAAACGTATAGCATACATTATACGAAGTTATCAG
TCGACATGGCGGAGTTCCAGTGGCCCTGGGAGTACACCTTCCCACCCTTC
TTTACACTACAGCCCCACGAAGAAACCAGACAGCAGCAGCTGAAGGTCTG
GACAGATCTCTTTCTCAAATACCTCAGGCACACGAATAGGTTTACTCTCA
GCATTGGGGACCAGAACTCGCCGCTGTTCCACAACGAAGCGCTGAAGCGC
CGCCTCTCGCCGGAACTCGTCCTGGCCATTCTGGGCGAGCTGGAGCGGAG
CGGGCATGCGAATCCGCTGGACAAGCGACGCCAGGAGTGGCAGGTGTACT
GGTTCACCCTCGAGGAGTACGGCAACATGGTGTACGACTGGGTGCAGGAA
ACGGGCCAGACGAACACCATCTGCACGCTGTACGAAATAGCCTCCGGCGA
GAACACCTCTCACCTGGACTTTTACGGCGTGGACGAGGCGGTGCTGCTCA
GTGCCCTCCGGTTGCTGGAGGAAAAGGGCAGGTGTGAGCTGATCGAGATG
GACGGCAGCCACGGCGTTAAGTTCTTCGCAAGCTTTCTAGACCATTCGTT
TGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATC
ATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTC
TCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAG
ATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGC
TCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAA
TTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAA
CCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATATATTTGC
CCATGGTGAAAACGGGGGCGAGAGTTGTCCATATGGCCACGTTTAAATCA
AACTGGTGAACTCACCCAGGATGGCTGATGAAAAACATATTCTCAATAAC
CCTTTAGGGAATAGGCAGGTTTTCCACGTACACGCCCCATCTGGCGATAT
ATTGTGTAGAACTGCCGGAATCGTCTGGAATTCACTCCGAGCGGATGAAC
GTCAGTTGCTCATGGAAACGGGGTTAACAAGGGTGAACACTATCCCGATA
TTACACAGAGCTTCTACGCGTCC
UFO01222.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps25-RA | 678 | CG14750-RA | 75..597 | 55..577 | 2615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8625628..8626099 | 106..577 | 2360 | 100 | Plus |
| 2R | 25286936 | 2R | 8625525..8625575 | 55..105 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:01:37 has no hits.
UFO01222.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:20 Download gff for
UFO01222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps25-RA | 70..605 | 46..587 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:15:14 Download gff for
UFO01222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps25-RA | 70..605 | 46..587 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:10 Download gff for
UFO01222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps25-RA | 70..605 | 46..587 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:10 Download gff for
UFO01222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8625520..8625575 | 46..105 | 93 | -> | Plus |
| 2R | 8625628..8626099 | 106..577 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:20 Download gff for
UFO01222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4513025..4513080 | 46..105 | 93 | -> | Plus |
| arm_2R | 4513133..4513604 | 106..577 | 100 | == | Plus |
