UFO01223.5prime Sequence
1200 bp (1021 high quality bases) assembled on 2008-07-17
> UFO01223.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGCCGATACTATATAGTGTGATATCGCGGGGCACCACAGTGCTGGCGA
AGTTTGCGGAGTGCGTCGGCAACTTTGCCGAAGTGACGGAGCACATAATC
GGACGGATCGGGGTGCATAACCACAAGATGACCTACACACACGGAGACTA
CCTGATCCACTACACCTGCGAGAACAAACTGGTCTACATGTGCATCACCG
ACAACGAGTTCGAACGGTCGCGGGCCTTCCTCTTCTTGGCGGATATCAAG
CAGAAGTTTATCCAGACTTACGGCCTACAGGTGGCCACCGCCATCGCCTA
CTCCATGAACACCGAGTTCTCCAAGATCCTGGCCCAGCAGATGGTCTATT
TCAGTCAGTCCCGGGAGGTGGACACCATTTCGCGAGTACATGGTCAGATT
GACGAGCTTAAAGACATTATGGTTAAGAATATTGACAGCTTGCGGGATCG
CGGCGAGAAACTAGAGCTGCTCGTCAACAAGACCGAAAACTTGAGCAATA
ATTCCGTTGCATTCCGTAAGGCCTCCCGAAATTTGGCTCGTCAAATGTTT
TGGAAGAACATCCGCGTCTACGTGGTGGTGGGTCTGGTGATAACCTTCAT
CGTTTACGTGATTGTGAGCATGGCCTGTGGTGGCCTCGCTTGGCAGTCCT
GTGTTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGT
GGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAG
ATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGC
GGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACT
GGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGC
CTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCGACATG
GAAGCCATGCCGACGCATGATGACTGATCGCAGCGGCATCAGCACTTGTC
GCCTGCGTATAAATATTTGCCCATGTGAAAACGGGGCAAAAGTGTCATAT
TGGCCACGTTATCAACTGGTGAACTCACCAGGAATGGCTGAACGAAACAT
ATTTCCAATTACCCGTTAGGAAAGGCCAGGTTTCACGGTTAACAGGCTCA
UFO01223.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vamp7-RC | 1148 | CG1599-RC | 377..1031 | 51..705 | 3275 | 100 | Plus |
| Vamp7-RA | 1090 | CG1599-RA | 319..973 | 51..705 | 3275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9841540..9841768 | 484..256 | 1145 | 100 | Minus |
| 2R | 25286936 | 2R | 9841846..9842051 | 256..51 | 1030 | 100 | Minus |
| 2R | 25286936 | 2R | 9841197..9841349 | 705..553 | 765 | 100 | Minus |
| 2R | 25286936 | 2R | 9841408..9841476 | 552..484 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:39:51 has no hits.
UFO01223.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:44 Download gff for
UFO01223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vamp7-RA | 308..986 | 42..714 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:15:07 Download gff for
UFO01223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1599-RA | 319..997 | 42..714 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:46 Download gff for
UFO01223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vamp7-RA | 308..986 | 42..714 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:46 Download gff for
UFO01223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9841847..9842062 | 42..255 | 98 | | Minus |
| 2R | 9841540..9841768 | 256..484 | 100 | <- | Minus |
| 2R | 9841184..9841349 | 553..714 | 97 | <- | Minus |
| 2R | 9841408..9841475 | 485..552 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:44 Download gff for
UFO01223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5728689..5728854 | 553..714 | 97 | <- | Minus |
| arm_2R | 5728913..5728980 | 485..552 | 100 | <- | Minus |
| arm_2R | 5729045..5729273 | 256..484 | 100 | <- | Minus |
| arm_2R | 5729352..5729567 | 42..255 | 98 | | Minus |
