UFO01224.5prime Sequence
1218 bp (1031 high quality bases) assembled on 2008-07-17
> UFO01224.5prime
CCGCATAACAACGTATAGCATACATTATACGAAGTTATCAGTCGACATGG
CCAAAAACACGTCCAGCAACGCGTTCCGCAAGATCGATGTGGACCAGTAC
AATGAGGACAACTTCCGGGAGGATGATGGGGTGGAGAGCGCGGCAGCCGG
TCCGGATGAGAGCGAGATTACGACGCTGCTGACGCAGGGAAAATCCGTGG
AGGCGCTCCTGAGTGCGCTGCAGAATGCCCCGCTGCGCTGCAAGAACCAG
AATGTGAAGGACCACGCCCTGAACATCACGCTGCGGGTGCTGCTGTCCAT
CAAGTCGACGCAAATGGACCAGGCCATCGACACCTTGGACCAGAACGACC
TAATAGACGTGCTGATGAAGTACATATATCGGGGATTCGAGATCCCCTCG
GAGGGCTCCAGTGGCCACCTGCTGCAGTGGCATGAGAAGGCCTTCGCCAA
GGGAGGAGTGGGCTGCATTGTCCGCGTGCTGTCCGACACAAATCGCGCCG
CAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCAT
AATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTG
GTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAAC
CGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCT
ATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCC
ACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAG
CCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTT
GTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGT
TGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGA
TTGGCTGAGACGAAAAACATATTCTCAATATGCCGTTTAGGGAATAGGCC
AGGTTTCACCGTAACACGCCACATCTTGCGAATATTTTGTGTAGAACTGC
GGAAATCGTCTGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCCT
CATGCAAACGGTGTAACAGGGTGAAACCTATCCCGTTCACCAGCTCACGT
CTTCATGGCCATACGAATCGATGAACATCATCAGCGGCCAGATTGTGAAA
TAAAGGGCGGAATAAAAC
UFO01224.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arpc5-RB | 1070 | CG9881-RB | 76..530 | 45..499 | 2275 | 100 | Plus |
| Arpc5-RA | 785 | CG9881-RA | 76..530 | 45..499 | 2275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2580642..2580883 | 258..499 | 1210 | 100 | Plus |
| 2L | 23513712 | 2L | 2580367..2580582 | 45..260 | 1080 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:23:23 has no hits.
UFO01224.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:58 Download gff for
UFO01224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arpc5-RA | 76..530 | 45..499 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:26:58 Download gff for
UFO01224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p16-ARC-RA | 77..531 | 45..499 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:17 Download gff for
UFO01224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arpc5-RA | 76..530 | 45..499 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:17 Download gff for
UFO01224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2580367..2580581 | 45..259 | 100 | -> | Plus |
| 2L | 2580644..2580883 | 260..499 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:58 Download gff for
UFO01224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2580367..2580581 | 45..259 | 100 | -> | Plus |
| arm_2L | 2580644..2580883 | 260..499 | 100 | == | Plus |
