UFO01225.5prime Sequence
1192 bp (1045 high quality bases) assembled on 2008-07-17
> UFO01225.5prime
GCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATG
GCGCTCCAAATAGCGCAGAACAACCGCGACGGCCAGCAGCTGGTGGGCGC
TGATCAGGGAAAGGTGGAGGTGTACGTGCTGTTTGCAAACACCACCTATC
GCACCCTGGATCTGTACTGGGTGTGCGAGCGGGAGCGGGAGAACATGTAC
CTTACCCTCAAGCCCTTCGAGGAGGTGCGGGTGAACACGTTCACCACACA
CAGCTGGCTGTTCCGGGATTACTACACGGGCGAACGGATGCACGTACGCT
CGCAGAGGATCTTTCAGCCGATTCGGGTGCGGGTACCCAAGAGCCAGCAG
AGTCCGGATCAGCTGGTTGACGTACGCAGCGAAGTGCTGATCCACTTTCC
GATGAGATCGCTGCGCGAAAACTGCCTCTGGCTGGTCGCCCGCTGGCTGA
TCCGGACGAGCAACGCGCCACGGAGGATTATCCACGGATACCACATACCC
TCGACGCTGAAGCAACAGCTGCTCAGCCTGCTGACCTGCATCGAGTCCTA
TTCCCGAGTGGCGGGCACGCGACGTCGGCGTGCAAGCTTTCTAGACCATT
CGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCAT
AATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGG
ATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAAT
CCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGC
GAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTT
GTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGA
TGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATATAT
TTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTT
TAAATCAAACTGGTGAAACTCACGCAGGATTGCTGAAACGAAAAACATAT
CTCATATCCTTTAGGGATGGCCAGCTTTCACGTAACCGCCAATCTGCAAT
ATATGTGTAGACCTGCGATCGTCTGCATTCACTCAGCGAGACGTTCAGTT
GCTATGGAACCGGTTAACCAGGGGAACCTATTTCCATATATT
UFO01225.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vhl-RB | 946 | CG13221-RB | 154..687 | 48..581 | 2670 | 100 | Plus |
| Vhl-RA | 1309 | CG13221-RA | 154..687 | 48..581 | 2670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11279878..11280411 | 48..581 | 2670 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:28:07 has no hits.
UFO01225.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:07 Download gff for
UFO01225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vhl-RA | 151..687 | 45..581 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:27:01 Download gff for
UFO01225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vhl-RA | 150..686 | 45..581 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:24 Download gff for
UFO01225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vhl-RA | 151..687 | 45..581 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:24 Download gff for
UFO01225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11279868..11280411 | 43..581 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:07 Download gff for
UFO01225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7167373..7167916 | 43..581 | 98 | == | Plus |
