UFO01226.5prime Sequence
1174 bp (1035 high quality bases) assembled on 2008-07-17
> UFO01226.5prime
TGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGA
CATGTCCGGCTCCGGTCTCGACGAGAATCCCTTCGGGGAGCCCAATCTGG
ACAATCCGTTTGCGGACCCCGCCATCCAGCAGGCACGACGACTCCAGAGC
GGCGCCGCCCTTGTCTCTCTTGAGGATTACAATCCATTCGAGGAGCAGGC
CAAGCCGCAGCTGCAGATCAACTCAACGAACACGGCGGCGGTGGTCCAGC
CGCTATCGCAGAACATTCCGCCCCCGCAGACCAGTTCCCTGGGCGCCTCG
GCGCCTAGCACCAGCATACAGATCACCTCGGAGGAGCTGCAGCGCCGGCA
GGAGGAGTTGGACCGCAAGGCCGCCGAACTGGACCGCCGCGAGCAGCAGC
TACAGGGCAATGTGCCGCAGCTGAACAACTGGCCACCGCTGCCGGATAAC
TTTTGTGTAAAGCCGTGCTTCTACCAGGACTTCGAGGTGGAGATACCGCC
CGAGTTCCAGAAACTGGTCAAGCGATTGTATTACATTTGGATTTTTTACA
CCATGACGTTGTTGGCCAACGTGATAGGCGGTCTAATTTTGCTGTTCCAC
GCTGGCGAATTCGAGACCTTCTTCCTGGCCATCTTCTACACGATGCTCTT
CTCGCCCGCCTCCTATGTCTGCTGGTTCCGACCGGCGTACAAGGCATTCC
GCAACGATTCGAGCTTCAACTTCATGGTCTTCTTCTTCATCTACTTCTTT
CAAACGCTGTACTCGATTGTGCAGGCGGTGGGCTTCAACAAGATGGGCTA
CTGTGGCTTTATTACGGCCATCGGGCAGTTCGATGGGCAAGCGTCGGGTA
TTATCGTCGGCATTCTGCTGTTGAACGTGGCATTCTGTTTCACAGCGGTG
GCCGTGCCAATGTGCTGATGATCACAAAGATTCACTCGATCTACCGCAGC
ACAGGGGCCAGTATGGGCCAAGCCCAGCGGAGTTCACCACGAGTTTCTGC
GCAACAGCACGTCAGAAGCAGCTCTCGGCCGTAATACGTCATCATCGCAG
TTTACACAGCAGTACGCAGCTTCTCGACATCGTTTGGCGCCGGTCAGTAT
GGTCAATATCCTAATCTATCTATCTAATCAACTAGCCTAGGAATCTGGTA
TGAACATAGGGCCGTGGAATTTCT
UFO01226.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scamp-RC | 2322 | CG9195-RC | 116..1131 | 51..1054 | 4730 | 98.5 | Plus |
| Scamp-RA | 2391 | CG9195-RA | 116..1131 | 51..1054 | 4730 | 98.5 | Plus |
| Scamp-RD | 2813 | CG9195-RD | 830..1553 | 343..1054 | 3270 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15447497..15447831 | 1005..674 | 1480 | 98.2 | Minus |
| X | 23542271 | X | 15449281..15449509 | 342..114 | 1145 | 100 | Minus |
| X | 23542271 | X | 15448379..15448583 | 544..340 | 1025 | 100 | Minus |
| X | 23542271 | X | 15447893..15448024 | 676..545 | 660 | 100 | Minus |
| X | 23542271 | X | 15449704..15449768 | 115..51 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:45:19 has no hits.
UFO01226.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:38 Download gff for
UFO01226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scamp-RA | 113..1112 | 47..1038 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:27:03 Download gff for
UFO01226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scamp-RA | 119..1118 | 47..1038 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:55 Download gff for
UFO01226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scamp-RA | 113..1112 | 47..1038 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:55 Download gff for
UFO01226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15449281..15449508 | 115..342 | 100 | <- | Minus |
| X | 15449705..15449771 | 47..114 | 97 | | Minus |
| X | 15448379..15448580 | 343..544 | 100 | <- | Minus |
| X | 15447497..15447830 | 675..1005 | 98 | <- | Minus |
| X | 15447895..15448024 | 545..674 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:38 Download gff for
UFO01226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15341530..15341863 | 675..1005 | 98 | <- | Minus |
| arm_X | 15341928..15342057 | 545..674 | 100 | <- | Minus |
| arm_X | 15342412..15342613 | 343..544 | 100 | <- | Minus |
| arm_X | 15343314..15343541 | 115..342 | 100 | <- | Minus |
| arm_X | 15343738..15343804 | 47..114 | 97 | | Minus |
