UFO01227.5prime Sequence
1211 bp (1062 high quality bases) assembled on 2008-07-17
> UFO01227.5prime
GATCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAG
TCGACATGATAGCAATGGACGAGCAGCGCGGCGACAAGATCTACGGCGGA
TGCGAGGGTCCGGACGCCATGTACGTGAAGCTGATTTCCTCGGACGGCCA
CGAATTTGTCGTCAAACGCGAGCACGCTCTCACCTCCGGCACAATCCGGG
CGATGTTGTCCGGACCGGGTCAGTTTGCCGAGAACGAGGCCAACGAGGTG
CATTTCCGGGAGATACCATCCCACGTCCTACAAAAGGTCTGCATGTACTT
CACCTATAAAGTGCGTTACACCAACAGTTCTACCGAAATACCCGAATTCC
CGATCGCTCCGGAGATCGCATTAGAACTTTTGATGGCGGCTAATTTCCTA
GACTGCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAG
TGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGA
GATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGG
CGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTAC
TGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCG
CCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGAC
ATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCA
GCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCG
AAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCAC
CCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGA
AATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGT
AGAAACTGCCCGGAAATCGTCGGGTATTCACTCCAGAGCGATGAAACGTT
TCAGTTTGCTCATGGAAACGGTGTACAGGGTGACACTATCCCATATCCAC
AGCTCACGTCTTTCATGCATACGAATCGGATGAACATCATCAGGCGGCAG
AATGGTGAATAAGGGCGGATAAACTGGTGCTTATTTTCTTACGACTGAAG
CCGTAATTCGCTGAACGCTTGGGTTAAGTGTACATTGGAGGCACACTGTG
AGCGTGGAAAG
UFO01227.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:10:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EloC-RB | 654 | CG9291-RB | 148..498 | 56..406 | 1755 | 100 | Plus |
| EloC-RA | 576 | CG9291-RA | 70..420 | 56..406 | 1755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:10:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19445928..19446139 | 267..56 | 1060 | 100 | Minus |
| 2R | 25286936 | 2R | 19445241..19445379 | 406..268 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:10:18 has no hits.
UFO01227.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:02 Download gff for
UFO01227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elongin-C-RA | 70..425 | 56..411 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:27:38 Download gff for
UFO01227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elongin-C-RA | 60..415 | 56..411 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:58 Download gff for
UFO01227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EloC-RA | 70..425 | 56..411 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:58 Download gff for
UFO01227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19445241..19445379 | 268..406 | 100 | <- | Minus |
| 2R | 19445928..19446143 | 46..267 | 97 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:02 Download gff for
UFO01227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15332746..15332884 | 268..406 | 100 | <- | Minus |
| arm_2R | 15333433..15333648 | 46..267 | 97 | -> | Minus |
