UFO01228.5prime Sequence
1177 bp (1037 high quality bases) assembled on 2008-07-17
> UFO01228.5prime
CTGCGGCCGCATAACATCGTATAGCATACATTATACGAAGTTATCAGTCG
ACATGGGAAATGAAACATCACTGCCCATGGAAATGTGTTCCAATTTCGAC
GCCGACGAGATCCGGCGGCTGGGCAAACGTTTCCGGAAACTGGACCTGGA
CAATTCGGGCGCGCTGAGCGTGGACGAGTTCATGTCGCTGCCGGAGCTGC
AACAGAATCCGCTGGTGCAGCGCGTGATCGACATTTTCGACGCGGACGGC
AACGGCGAGGTGGACTTCAAGGAGTTCATCCAGGGCGTGTCGCAGTTCAG
CGTCAAGGGCGACAAGCTGTCCAAGTTGCGCTTCGCCTTTCGCATCTATG
ACATGGACAACGATGGTTACATTTCCAATGGCGAACTGTTTCAGGTTTTA
AAGATGATGGTAGGCAATAATCTGAAGGACACGCAACTGCAGCAGATTGT
GGACAAGACGATCGGATTCGCGGATAAGGATGAGGATGGCAAGATCTCGT
TCGATGAGTTCTGCTCTGTGGTCGGCAACACGGACATTCACAAGAAGATG
GTAGTCGATGTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCA
GGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGC
CTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAAC
GCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGT
CATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTAC
GCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCT
GCCGACATGGAAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGC
GGCATCAGCACCTTGTCGCCTTGCGTATATATTTGCCCATGATGAAACGG
GGCGAAGAAGTTGTCCATATTGGCCACGTTAAATCAAACTGTGAACTCAC
CCAGGATTGCTGAAACGAAAACATATCTCATAACCCTTTAGAATAGCAGT
TCACGTAACACGCCACATCTGCAATTATGTGTAGAACCTGCGAAATCGTC
TGGCATTCATCGAGCGATGAACGTTCAGTGCCTATGACGGTACAGGTGTA
ACATATCATTCCAAGCTACGGTCTTCA
UFO01228.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CanB2-RB | 2061 | CG11217-RB | 257..766 | 53..562 | 2550 | 100 | Plus |
| CanB2-RA | 1143 | CG11217-RA | 257..766 | 53..562 | 2550 | 100 | Plus |
| CanB-RB | 1148 | CG4209-RB | 103..612 | 52..561 | 1410 | 85.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7787234..7787533 | 96..395 | 1500 | 100 | Plus |
| X | 23542271 | X | 5333404..5333913 | 52..561 | 1410 | 85.1 | Plus |
| 2R | 25286936 | 2R | 7787589..7787758 | 393..562 | 850 | 100 | Plus |
| 2R | 25286936 | 2R | 7786499..7786539 | 55..95 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:28:01 has no hits.
UFO01228.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:42 Download gff for
UFO01228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanB2-RA | 257..769 | 53..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:20:05 Download gff for
UFO01228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanB2-RA | 255..767 | 53..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:39 Download gff for
UFO01228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanB2-RA | 257..769 | 53..566 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:39 Download gff for
UFO01228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7787234..7787532 | 96..394 | 100 | -> | Plus |
| 2R | 7787591..7787758 | 395..562 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:42 Download gff for
UFO01228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3675096..3675263 | 395..562 | 100 | == | Plus |
| arm_2R | 3674739..3675037 | 96..394 | 100 | -> | Plus |
