UFO01229.5prime Sequence
1200 bp (1053 high quality bases) assembled on 2008-07-17
> UFO01229.5prime
AGATCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCA
GTCGACATGGAGAACAACGAAGCCCCCTCCCCCTCGGGATCCAACAACAA
CGATTTTCCCATACTTCCGCCACCGCCGAACGCGAATGACAACTACAATC
AATTCGGTGACCATCAAATCAGGAACAACAATGCAGCCCAGAAGAAGCTG
CAGCAGACCCAAGCCAAGGTGGACGAGGTGGTCGGGATTATGCGTGTGAA
CGTGGAGAAGGTCCTGGAGCGGGACCAGAAGCTATCGGAACTGGGCGAGC
GTGCGGATCAGCTGGAGCAGGGAGCATCCCAGTTCGAGCAGCAGGCCGGC
AAGCTGAAGCGCAAGCAATGGTGGGCCAACATGAAGATGATGATCATTCT
GGGCGTGATAGCCGTTGTGCTGCTCATCATCGTTCTGGTGTCGCTTTTCA
ATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGT
CATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATC
CTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGC
AACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGA
TCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCT
GCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGG
AAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCAC
CTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGA
AGTTGTCCATATTGGCCCACGTTTAAATCAAAACTGGTGAAACTCACCCA
GGGATTGGCTGAGACGAAAACATATTCTCAATAAACCCTTTAGGGAAATA
GGCCAGGTTTTCACCGTACACGCCACATCTTGCGAATATATGTGTAGAAC
TGCGGAAATCGTCGTGTATTCACTCAGAGCGATGAAACGTTCAGTTTGCT
CATGAAACGTGTACAGGTGACACTATCCCATATCACAGCTCACGTCTCAT
GCATACGAAGTCGATGAACATCATCAGCGGCAGAATGGATAGGCGATAAG
ACTTGGCATATTTCTTACGGCCTTGAAGGGCGTATATACACCTGTAACGG
UFO01229.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syb-RB | 1139 | CG12210-RB | 147..542 | 57..452 | 1980 | 100 | Plus |
| Syb-RC | 921 | CG12210-RC | 147..532 | 57..442 | 1930 | 100 | Plus |
| Syb-RD | 1070 | CG12210-RD | 194..473 | 173..452 | 1400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10250879..10251213 | 438..104 | 1675 | 100 | Minus |
| 3L | 28110227 | 3L | 1635328..1635439 | 359..248 | 245 | 81.2 | Minus |
| 2R | 25286936 | 2R | 10251928..10251974 | 103..57 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:42:04 has no hits.
UFO01229.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:05 Download gff for
UFO01229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syb-RB | 142..542 | 52..452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:20:07 Download gff for
UFO01229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syb-RB | 134..534 | 52..452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:18 Download gff for
UFO01229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syb-RB | 142..542 | 52..452 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:18 Download gff for
UFO01229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10250879..10251213 | 104..438 | 100 | <- | Minus |
| 2R | 10251928..10251979 | 52..103 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:05 Download gff for
UFO01229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6138384..6138718 | 104..438 | 100 | <- | Minus |
| arm_2R | 6139433..6139484 | 52..103 | 96 | | Minus |
