UFO01230.5prime Sequence
1220 bp (1054 high quality bases) assembled on 2008-07-17
> UFO01230.5prime
GCCGCATAACATCGTATAGCATACATTATACGAAGTTATCAGTCGACATG
TTGGCCAAAAAACAGAAAATGCAGGAGACGGACACGGAGCAAGAGGCCAC
GCCACATACGATACAGGCGCGCCTCGTTTCGGACACGGGCGAGGAAGCCG
GCCCGCCAATCGACCTGCCGGCAGGAATCACTACCCAGCAATTGGGACTG
ATTTGCAACGCGCTGCTGAAAAACGAGGAAGCCACTCCATATTTGTTTTT
CGTGGGCGAGGATGAGATCAAGAAGAGCCTGGAGGACACGTTGGACTTGG
CGTCAGTGGACACCGAAAACGTGATCGATATTGTGTATCAGCCACAGGCG
GTTTTCAAAGTGCGCCCAGTGACAAGATGCACGAGTTCCATGCCGGGACA
CGCCGAGGCTGTGGTTTCGCTGAATTTCAGCCCGGATGGTGCTCATCTCG
CCAGTGGAAGTGGCGACACCACAGTGCGATTGTGGGATCTTAACACAGAG
ACACCGCACTTCACCTGCACAGGTCATAAGCAGTGGGTTCTGTGCGTATC
CTGGGCTCCGGATGGCAAACGGTTGGCCAGCGGTTGCAAAGCGGGCTCTA
TAATCATCTGGGACCCGGAGACGGGTCAGCAGAAGGGGCGACCATTGAGT
GGGCACAAGAAACACATCAACTGCCTCGCCTGGGAACCGTATCATCGCGA
TCCGGAGTGCAGGAAACTTGCTTCCGCCAGTGGAGACGGGGACTGCCGGA
TTTGGGACGTAAAATTGGGCCAGTGCCTTATGAACATTGCCGGACACACA
AATGCTGTGACAGCAGTGAGATGGGGTGGAGCGGGCCTTATTTATACATC
CTCCAAAGATCGCACAGTGAAGATGTGGCGAGCAGCTGATGGAATCTTGT
GCCGGACGTTCTCTGGCCACGCTCACTGGGTAAACAACATTGCGCTGAGC
ACCGATTACGTCCTGCGCACTGGTTCATTCCATCCGGTGAAGGATCGCTC
CAGAGCCACCTCAGTTTGAGCACTGAGATTGCAGATCTGCCTTGAAGCGC
TACAGGCGTGGTGCCCTGACCAGGTGGAGTCGCTTGCTTCTGTTCGATGA
CAACACCCTCTATCTGTGGCGGACACCAGACAAGTTGCGTTGACCCATGA
CGGAACCGAACCGTGTCAGGAGTGAAAATTCGCCGGAAGTTTAAGCCTTA
ATGTGCCTCTGTGCTTATCA
UFO01230.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nle-RA | 1584 | CG2863-RA | 58..1172 | 48..1151 | 5080 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 567089..568064 | 1022..48 | 4740 | 99.3 | Minus |
| 2L | 23513712 | 2L | 566923..567014 | 1123..1035 | 220 | 90.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:29:26 has no hits.
UFO01230.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:26 Download gff for
UFO01230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nle-RA | 56..1163 | 45..1143 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:28:02 Download gff for
UFO01230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nle-RA | 97..1204 | 45..1143 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:20 Download gff for
UFO01230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nle-RA | 56..1163 | 45..1143 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:20 Download gff for
UFO01230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 567089..568066 | 45..1022 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:26 Download gff for
UFO01230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 567089..568066 | 45..1022 | 99 | | Minus |
