UFO01232.5prime Sequence
1225 bp (1076 high quality bases) assembled on 2008-07-17
> UFO01232.5prime
ATCTGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGT
CGACATGGAATTTTTACACGAATCCGTTGCACTGGGCGTGGATCTGCTAA
TACTTGGCCTGTGTGCGCGCGAGTACGTGCACTACAAGCGAACTGCCAAG
GTGCTGAAGGCGGCACCACAATACAACATCGATGGAGACCTAAAATCGGT
GGTGGAGCGGCAGCGCGACAAGAAGATACCATATGCGGTAATCCGGGGCA
CAGTGACGCCCATCGGGGTGCCACTGAGGAGCTCCCTGGTGCCCAGTGTG
AGTGGAGTGCTGCAGATTGTGAAGCTGCATGAGCACAGGGTAACGCGCGG
ATTCGCCGGCTTCTGGACGGAACAACACAAGTTGCTGCACGAATCCGCCA
ACGAGATGCCCTTCGAGTTGCGTAACCAGAGCCATGGTGTGGAGATTGTG
GACGCCTTGAGTGCCGCCGTCTTGGACGTGGACGTGGTCTACGACAACTA
CGAGCCCTCCAATCTGTCCCTCTTCGACCATGTGTTTGGTTTCTTCTCTG
GCGTCCGTCAGAGGGGATTGCAAACGACGGAGGAGGTGCTCAGAGAAGGC
AGCTTCCTGACCGCTATTGGTGAACTGGAGTTGGATGGCGATACTCTGCG
CATGCAGCCCTCCAATGAGGGACCGCTCTTCCTGACCACTGCCACCAAGT
CCACGCTTATTAAGCGGTTCGAAGATGCCAAGACAACGACGATACTCAAG
CTGGTTGTGTGCAGCACCATCTCTGCCATCCTGGTTGCCTTCATTGCCAA
GAAACTCTACCGAAAACGAAAGCAGGAGCGGGAGGAGGCCAAAATTCGCG
AACGCCTGTATACGGAGCGTCGGGAGCGGAGGGCGAGGAGTCGTCCTCAC
ACTCTGTCCCAGGATCAACTCTGCGTGGTGTGCTCCACCAATCCCAAGGA
GATTATCCTACTGCCATGTGGTCATGTGTGTCTCTGCGAGGACTGTGCCC
AGAAATCTCCGTCACCTGCCCCGTGTGTCGTGTAGCATCGTCTCCAAGGC
AGCCGCCTTCATCGCCGCAAGCTTTCTAGAACATCGGTTTGGCGCGCGGC
CCAGGTAGTGGTCATATCATAATCATATCTAATCATATCACAACTAGCCT
AGGGAATTCTGCATGACTATGGCTTGATTCTCCACAATAAAAGCGCCGGG
GGCAACCGAAGCGTCTCGGAACAAA
UFO01232.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mul1-RB | 1656 | CG1134-RB | 79..1092 | 55..1066 | 5005 | 99.7 | Plus |
| Mul1-RA | 1213 | CG1134-RA | 79..1092 | 55..1066 | 5005 | 99.7 | Plus |
| CG11594-RA | 2895 | CG11594-RA | 2658..2776 | 1066..950 | 545 | 98.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4021702..4022287 | 158..743 | 2930 | 100 | Plus |
| 3L | 28110227 | 3L | 4022346..4022553 | 744..951 | 1025 | 99.5 | Plus |
| 3L | 28110227 | 3L | 4021535..4021640 | 55..160 | 530 | 100 | Plus |
| 3L | 28110227 | 3L | 4022819..4022937 | 950..1066 | 495 | 98.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:22:55 has no hits.
UFO01232.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:48 Download gff for
UFO01232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mul1-RA | 73..1092 | 47..1066 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:24:33 Download gff for
UFO01232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1134-RA | 91..1110 | 47..1066 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:59 Download gff for
UFO01232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mul1-RA | 73..1092 | 47..1066 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:59 Download gff for
UFO01232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4021535..4021639 | 55..159 | 100 | -> | Plus |
| 3L | 4021704..4022287 | 160..743 | 100 | -> | Plus |
| 3L | 4022346..4022553 | 744..951 | 99 | -> | Plus |
| 3L | 4022821..4022939 | 952..1069 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:48 Download gff for
UFO01232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4021535..4021639 | 55..159 | 100 | -> | Plus |
| arm_3L | 4021704..4022287 | 160..743 | 100 | -> | Plus |
| arm_3L | 4022346..4022553 | 744..951 | 99 | -> | Plus |
| arm_3L | 4022821..4022939 | 952..1069 | 96 | -> | Plus |
