UFO01235.5prime Sequence
1199 bp (1014 high quality bases) assembled on 2008-07-17
> UFO01235.5prime
TCTGCGGCCGCATAACAACGTATAGCATACATTATACGAAGTTATCAGTC
GACATGGCCGAGGAGATAGAGGTTGAGGAGACGGAGGACTTCCACGACAT
GGACTTCAATGACGAAGAGCCATCCTGTAGTGGAGGAGCTGTCCAGGCCA
GGACGGAGCGCTTTGTGGTGAAGAAATGGGTTGCGCACGCCATGTGGGGA
TGGGACGTAGCAGTGGACAACTGTGCCATCTGCCGTAACCACATCATGAA
CCTGTGCATCGAGTGCCAGGCGGACCCGAATGCAAACCAAGACGAGTGCA
CTGTGGCTTGGGGCGAGTGCAACCACGCATTCCATTACCACTGCATCGCG
CGCTGGTTGAAAACGCGCCTGGTCTGTCCGCTGGACAACAAGGAGTGGGT
CTACCAGAAGTACGGCCGCGCAAGCTTTCTAGACCATTCGTTTGGCGCGC
GGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCAC
AACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAAT
AAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTT
CTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATC
AAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAA
GCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATC
GCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGT
GAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAAC
TGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATA
AACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTG
CGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGTATCACTCCAGAGC
GATGAAAACGTTCAGTTCGTAATGAAAACGGTGTAACAGGGTGACACTAT
CCCATATTCACAGCTCACGTCTTCATGCATACGAAGTCGATGACATCATC
AGGCGGGCAGAATGTAATAAGCGATAAAACTTGTGCTATTTCCTTACGCT
TAAGGCGTAATTCATCTGAACCGACTTGGCAAAAGGTAACTATTGTGGA
UFO01235.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:09:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc5-RB | 3219 | CG6905-RB | 2674..3040 | 419..53 | 1835 | 100 | Minus |
| Cdc5-RA | 3346 | CG6905-RA | 2801..3167 | 419..53 | 1835 | 100 | Minus |
| Roc1b-RA | 506 | CG16988-RA | 50..416 | 53..419 | 1835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:09:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 358030..358396 | 53..419 | 1835 | 100 | Plus |
| X | 23542271 | X | 647711..647918 | 213..417 | 405 | 80.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:09:13 has no hits.
UFO01235.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:25 Download gff for
UFO01235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc1b-RA | 44..420 | 45..425 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:15:11 Download gff for
UFO01235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6905-RA | 2797..3173 | 45..425 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:28 Download gff for
UFO01235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc1b-RA | 44..420 | 45..425 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:28 Download gff for
UFO01235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 358024..358396 | 45..419 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:25 Download gff for
UFO01235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 358024..358396 | 45..419 | 98 | == | Plus |
