UFO01236.5prime Sequence
1209 bp (1026 high quality bases) assembled on 2008-07-17
> UFO01236.5prime
ATCTGCGGCCGCATAACAACGTATAGCATACATTATACGAAGTTATCAGT
CGACATGGGCGACTCACCGGAAGAGCGGCGCAGCAAGGATGTCGTGCCAG
AGACCGCCGCCAAGGAGGCGGAAACTGGCAAGGGCAAAAAGGAGAAGAAA
GAAAAGTCGGCCGAGGGCACTAAGCCGAGGCCGGCAAGCAGCCAGCGCGG
ATCGCTGACCAAGTCCCATATGGGCGTTTCCTTGCCGATGGGTGCTCCGG
CAGCCAAGCCCACCATGCGGTTCATGCCCACCTACCGCCTGGAGTCCAAG
AATCCGCTCAACAAGGAACGCGTGGAGAACATCATAAAGGCGGTGATGAA
CCGACACTACAACGATGAGTACATGTTCCATCCCAAGCATTCCCTCCACA
TGGCCGCGCAAGTGAGCGAGGAAATCAAGAACCGCATCAAACTCGACAAC
TACGACAGATATCGCTACATAGTGCTGGTCACTGTGGGCGAGTTCCTGAT
GCAGGGCCTCTACTCCATGGTCAACTTCCTGTGGGATGCTGAAAAAGACG
GATTTGTGACCTACAGCGTGGAGAGACCCTCGTACTTTGCAGTCTGCACC
ACCTTTTACCTGTACTACGATGCAAGCTTTCTAGACCATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATC
ACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCA
ATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAG
TTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATA
TCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATT
AAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCCTGA
TCGCCAGCGCATCAGCACCTTGTCGCCTTGCGTATATATTTGCCCATGTG
AAAACTGATGCGAAGAGTTGTCCATATTGCCCGTTTAAATCAACCTGGTG
AACCTCACCCAGGGATTGCTGAAACGAAAACATATTCTCATAATCCTTAA
GGAAATAGCCAGTTTCACGTACACCGCCCCATCTTGCAATATATGGTAGA
ACTGCGAATCGCTGCATCACTCGAAGCGGTGAAACCGTTCCAGTGTGCGT
CTCTCATTG
UFO01236.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14763-RC | 906 | CG14763-RC | 16..583 | 54..621 | 2840 | 100 | Plus |
| CG14763-RB | 690 | CG14763-RB | 16..583 | 54..621 | 2840 | 100 | Plus |
| CG14763-RA | 647 | CG14763-RA | 16..583 | 54..621 | 2840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7967059..7967264 | 458..253 | 1015 | 99.5 | Minus |
| 2R | 25286936 | 2R | 7966842..7967007 | 621..456 | 830 | 100 | Minus |
| 2R | 25286936 | 2R | 7967886..7968009 | 177..54 | 620 | 100 | Minus |
| 2R | 25286936 | 2R | 7967319..7967400 | 258..177 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:24:19 has no hits.
UFO01236.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:34 Download gff for
UFO01236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14763-RA | 8..587 | 45..626 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:24:31 Download gff for
UFO01236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14763-RA | 8..587 | 45..626 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:51 Download gff for
UFO01236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14763-RA | 8..587 | 45..626 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:51 Download gff for
UFO01236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7966838..7967004 | 459..626 | 98 | <- | Minus |
| 2R | 7967059..7967258 | 259..458 | 100 | <- | Minus |
| 2R | 7967319..7967399 | 178..258 | 100 | <- | Minus |
| 2R | 7967886..7968023 | 39..177 | 93 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:34 Download gff for
UFO01236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3854343..3854509 | 459..626 | 98 | <- | Minus |
| arm_2R | 3854564..3854763 | 259..458 | 100 | <- | Minus |
| arm_2R | 3854824..3854904 | 178..258 | 100 | <- | Minus |
| arm_2R | 3855391..3855528 | 39..177 | 93 | <- | Minus |
