UFO01238.5prime Sequence
1192 bp (1049 high quality bases) assembled on 2008-07-17
> UFO01238.5prime
CCGCATAACAACGTATAGCATACATTATACGAAGTTATCAGTCGACATGT
CCAGCGATCAGGTGAATTCCCAAACGGAAATGGAAACGGAAGCGCGAGCG
CGAGCGGAGGTGGAAGTGGAGGTCGAACCAGAAGTGCTCTCGAGAGCCAG
TGTGGCCAGCTCCGTAGAAGAGACGGCACCCAGCACCAGTCACAGTGCAT
CGGGAAAATCCACCGAGGCACCACTTACTGGTTGTGTGGTGCGAATTAAG
AGCGAACTGCAGGACATTCGGAAAAATCCGCCACCGAATTGCACCGCCGA
TTTGCATCACGGGGATCTTCTTCACTGGACGGCAGGTGTGAACGGGCCAG
TTGGCTCCGTATACGAAGGCGGTCACTTCCGGCTGGATATACGATTTCCG
GCCAGCTATCCATTCCGGGCGCCACGCATTCGGTTCACCACCCGAATATA
CCACTGCAACGTGGACAGTCGCGGCGCCATTTGCCTGGATGTCCTCGGCG
AACGATGGTCCCCAGTGATGAATGTGGCCAAGGTTCTACTTTCCATTTAC
GTGCTGATGAGTGAGTGCAATCCAGATGATCCGCTAGTCATGTGCATTGC
CGATCAGTACAAAACCAATCGCAGGGAGCACGACAAAATTGCTAGACACT
GGACCAAGCTGTTTGCAATGACCAAGGCGCAGGATAAGAACAGAGAAAAG
GATGCGGATCAGGGTAATGAGCAAAATCAGGAAGAAAATCCAATGCCAGG
ACAGCAAGGAAATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCC
AGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAG
CCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAA
CGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGG
TCATTACTGGATCTATCACAGAGTCCAAGCGAGCTCGATATCAAATTACG
CCCCGCCTGCCACTCATCGCAGTACTGTGTATCATAGCATTCTGCGACAT
GCAGCATCACAACGCATGATGACTGAATCGCATGGCTCAGCACCTTGTCG
CTGCGTATTATATTTGGCCATGCTGAACGGGCAGACTGCCAATTGCCCAG
TCATCGACTGGTACTCACCAGGATTGCCTGAACGAAAACCGA
UFO01238.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2574-RA | 896 | CG2574-RA | 95..811 | 47..763 | 3555 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12408955..12409442 | 47..534 | 2440 | 100 | Plus |
X | 23542271 | X | 12409508..12409740 | 531..763 | 1135 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:24:24 has no hits.
UFO01238.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:38 Download gff for
UFO01238.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2574-RA | 86..814 | 37..767 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:23:40 Download gff for
UFO01238.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2574-RA | 58..786 | 37..767 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:55 Download gff for
UFO01238.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2574-RA | 86..814 | 37..767 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:55 Download gff for
UFO01238.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12408946..12409440 | 37..532 | 99 | -> | Plus |
X | 12409510..12409743 | 533..767 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:38 Download gff for
UFO01238.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12303543..12303776 | 533..767 | 98 | == | Plus |
arm_X | 12302979..12303473 | 37..532 | 99 | -> | Plus |