Clone UFO01238 Report

Search the DGRC for UFO01238

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:12
Well:38
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG2574-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO01238.5prime Sequence

1192 bp (1049 high quality bases) assembled on 2008-07-17

> UFO01238.5prime
CCGCATAACAACGTATAGCATACATTATACGAAGTTATCAGTCGACATGT
CCAGCGATCAGGTGAATTCCCAAACGGAAATGGAAACGGAAGCGCGAGCG
CGAGCGGAGGTGGAAGTGGAGGTCGAACCAGAAGTGCTCTCGAGAGCCAG
TGTGGCCAGCTCCGTAGAAGAGACGGCACCCAGCACCAGTCACAGTGCAT
CGGGAAAATCCACCGAGGCACCACTTACTGGTTGTGTGGTGCGAATTAAG
AGCGAACTGCAGGACATTCGGAAAAATCCGCCACCGAATTGCACCGCCGA
TTTGCATCACGGGGATCTTCTTCACTGGACGGCAGGTGTGAACGGGCCAG
TTGGCTCCGTATACGAAGGCGGTCACTTCCGGCTGGATATACGATTTCCG
GCCAGCTATCCATTCCGGGCGCCACGCATTCGGTTCACCACCCGAATATA
CCACTGCAACGTGGACAGTCGCGGCGCCATTTGCCTGGATGTCCTCGGCG
AACGATGGTCCCCAGTGATGAATGTGGCCAAGGTTCTACTTTCCATTTAC
GTGCTGATGAGTGAGTGCAATCCAGATGATCCGCTAGTCATGTGCATTGC
CGATCAGTACAAAACCAATCGCAGGGAGCACGACAAAATTGCTAGACACT
GGACCAAGCTGTTTGCAATGACCAAGGCGCAGGATAAGAACAGAGAAAAG
GATGCGGATCAGGGTAATGAGCAAAATCAGGAAGAAAATCCAATGCCAGG
ACAGCAAGGAAATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCC
AGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAG
CCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAA
CGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGG
TCATTACTGGATCTATCACAGAGTCCAAGCGAGCTCGATATCAAATTACG
CCCCGCCTGCCACTCATCGCAGTACTGTGTATCATAGCATTCTGCGACAT
GCAGCATCACAACGCATGATGACTGAATCGCATGGCTCAGCACCTTGTCG
CTGCGTATTATATTTGGCCATGCTGAACGGGCAGACTGCCAATTGCCCAG
TCATCGACTGGTACTCACCAGGATTGCCTGAACGAAAACCGA

UFO01238.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG2574-RA 896 CG2574-RA 95..811 47..763 3555 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12408955..12409442 47..534 2440 100 Plus
X 23542271 X 12409508..12409740 531..763 1135 99.1 Plus
Blast to na_te.dros performed on 2014-11-28 20:24:24 has no hits.

UFO01238.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:38 Download gff for UFO01238.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2574-RA 86..814 37..767 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:23:40 Download gff for UFO01238.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2574-RA 58..786 37..767 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:55 Download gff for UFO01238.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2574-RA 86..814 37..767 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:55 Download gff for UFO01238.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12408946..12409440 37..532 99 -> Plus
X 12409510..12409743 533..767 98 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:38 Download gff for UFO01238.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12303543..12303776 533..767 98 == Plus
arm_X 12302979..12303473 37..532 99 -> Plus