UFO01239.5prime Sequence
1192 bp (1071 high quality bases) assembled on 2008-07-17
> UFO01239.5prime
ATCTGCGGCCGCATAACTACGTATAGCATACATTATACGAAGTTATCAGT
CGACATGCAAAAACTGCGCAGTTTGTTTCTCAGGAAATCAGCCCATACAA
ATCGCCCAGGTAGCTCTACTTCTGGCGAGGCAGACGATGCCAGCAGGCCA
GGTGAATCTATCCTGGTGCGGGTAATCTGCCCCAGCTCTCGGGTTCTTAT
CTTCAAAACGGACGTTAATAAGCGCCTAAACGAGCTGAAGAGTGAGGTGA
TTCTGGAACTGAGCGACGATCCCGACTCCATCCAGCTATTTGCCCCAGAT
GTGCGGCATCTTAATCCGCGATACCGTCTCTATCGGGCGGAATACTTCGG
CGGCGAGCTTAACGAGGGCGACACGCTGGCCCAGCTAAAAGTTCGCAACA
ATGAGACTTTTATACTCTCTCCACGACGCAATACTCTGCCGCAGACTGTT
TCACGGATACGTGAGGTTCCTGGCCCAAATGAGCAGCTGGTGGAGAGCGC
CACCCGATACGTGCCCGTCAATTGCAACCAGCTGCCCACCATCGATATTA
ATGAAATCTTTCAGCAGTCGAATATCCAATACGATGTGCGAAAGGTGTTG
ATCTCTTTGGCTCAAGCTTCTGCGGCGGTTATAGGAGCTGGCCCTTATGC
TCCACGCCTGATAGCTATGCTAAAGCAACGTTTGATCAATCGCCGAAATC
AGCAAGCGGATACGCTGCAATGCCTCGTGGACATGGGCTTCAAGCGGGAG
CTAGCCGCATTTGCCTTAAAAGCACACAATGGCATTTACTCGACCACGAT
GGAGTGGCTAATACAGAACCAAAACGAGGAAAATCCACAGGAACCGCCGG
GCATGAATATGCAGCACAGTCTATCTTCCATCTCACCCTCCACGATTGTC
ACCAATAATGAAACCATTGAAAACACTGCTGCCTTGATTGAGATTGTACG
AATCTACAGCCACCGGGATTCCCCTCCCAGCGATGAGATTGTAGAATCGC
TTACAGAAATGGGCTTCGAGGAGACGGCAGTGCTTGCGCGCTGAGAAACT
GGCACACAGCGTCCGCGTGCGATGTGTGCGACATCGATCGGTAGCGTATG
ACTGCTGAGCTGCGCCGATCGCCCATCTAAGGTGTATCTGAATGCCAAGT
CGAGACCTAGCATCAGACTTTTTGCATTCCTGGCACTCTCGT
UFO01239.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| isopeptidase-T-3-RB | 1778 | CG11025-RB | 105..1159 | 55..1097 | 4920 | 98.4 | Plus |
| isopeptidase-T-3-RC | 2491 | CG11025-RC | 533..1570 | 72..1097 | 4835 | 98.4 | Plus |
| isopeptidase-T-3-RA | 2479 | CG11025-RA | 533..1558 | 84..1097 | 4775 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19671359..19671850 | 82..573 | 2430 | 99.6 | Plus |
| 2R | 25286936 | 2R | 19671906..19672242 | 574..910 | 1685 | 100 | Plus |
| 2R | 25286936 | 2R | 19672294..19672422 | 910..1038 | 615 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:32:08 has no hits.
UFO01239.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:01 Download gff for
UFO01239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| isopeptidase-T-3-RB | 105..1159 | 55..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:24:36 Download gff for
UFO01239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| isopeptidase-T-3-RB | 105..1159 | 55..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:43 Download gff for
UFO01239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| isopeptidase-T-3-RB | 105..1159 | 55..1097 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:43 Download gff for
UFO01239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19671906..19672241 | 574..909 | 100 | -> | Plus |
| 2R | 19672294..19672493 | 910..1097 | 92 | | Plus |
| 2R | 19671361..19671850 | 84..573 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:01 Download gff for
UFO01239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15559411..15559746 | 574..909 | 100 | -> | Plus |
| arm_2R | 15559799..15559998 | 910..1097 | 92 | | Plus |
| arm_2R | 15558866..15559355 | 84..573 | 99 | -> | Plus |
